Showing : enrichplot • reset
2
votes
6
replies
2.3k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
17 months ago • updated 16 months ago Emilia ▴ 30
6
votes
4
replies
1.4k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 9 hours ago by • 0 • written 3.0 years ago by ▴ 120
0
votes
1
reply
775
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 2.3 years ago by ★ 3.2k • written 2.3 years ago by • 0
0
votes
0
replies
749
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
4.0 years ago jan.soderman • 0
2
votes
4
replies
723
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 2.3 years ago by 59k • written 2.3 years ago by ▴ 30
1
vote
4
replies
655
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 7 weeks ago by • 0 • written 10 months ago by • 0
1
vote
4
replies
586
views
enrichDGN result can't be visualised by barplot
enrichplot
7 months ago Pahi • 0
0
votes
0
replies
579
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
3.3 years ago yurigorelik ▴ 10
0
votes
1
reply
526
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 16 months ago by ▴ 30 • written 17 months ago by • 0
5
votes
13
replies
504
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 9 weeks ago by ▴ 40 • written 9 weeks ago by • 0
0
votes
2
replies
352
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
7 months ago Adarsh • 0
0
votes
0
replies
351
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
2.1 years ago jan.soderman • 0
0
votes
0
replies
351
views
EnrichGO
R enrichplot
updated 9 months ago by 3.5k • written 9 months ago by • 0
2
votes
1
reply
251
views
Parsing geoms to enrichplot
enrichplot
21 months ago Francois Marchildon ▴ 20
1
vote
1
reply
248
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
5 months ago fatimaruizdelabastida • 0
0
votes
1
reply
233
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 6 months ago by • 0 • written 6 months ago by • 0
1
vote
3
replies
201
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 7 weeks ago by ★ 2.9k • written 7 weeks ago by • 0
0
votes
1
reply
154
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 7 weeks ago by • 0 • written 3 months ago by ▴ 10
18 results • Page 1 of 1
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Comment: broken chain import in liftOver by Marcel Ramos 570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated. by James W. MacDonald 59k
See `removeBatchEffect` in the `limma` package.
Comment: GDCdownload Directory Problem :( by Marcel Ramos 570
FWIW, `TCGAutils` is not a related package.
Comment: help please！ by 1051444231 • 0
I have updated Rtools
Comment: help please！ by 1051444231 • 0
> BiocManager::install("AnnotationDbi",force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' …
Votes
Answer: broken chain import in liftOver
Answer: toGRanges help!
Answer: toGRanges help!
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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