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enrichplot
•
reset
2
votes
6
replies
2.3k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot
clusterProfiler
17 months ago • updated 16 months ago
Emilia
▴ 30
6
votes
4
replies
1.4k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler
enrichplot
updated 9 hours ago by
Kazuna
• 0 • written 3.0 years ago by
charles.foster
▴ 120
0
votes
1
reply
775
views
emapplot (enrichplot) with compareCluster object does not work
emapplot
enrichplot
clusterProfiler
compareCluster
updated 2.3 years ago by
Guido Hooiveld
★ 3.2k • written 2.3 years ago by
rapmic
• 0
0
votes
0
replies
749
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map
emapplot
enrichplot
enrichMap
DOSE
4.0 years ago
jan.soderman
• 0
2
votes
4
replies
723
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler
enrichplot
cnetplot
updated 2.3 years ago by
James W. MacDonald
59k • written 2.3 years ago by
anders.tondell
▴ 30
1
vote
4
replies
655
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq
clusterProfiler
enrichplot
updated 7 weeks ago by
Lihe
• 0 • written 10 months ago by
jiro.becker
• 0
1
vote
4
replies
586
views
enrichDGN result can't be visualised by barplot
enrichplot
7 months ago
Pahi
• 0
0
votes
0
replies
579
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot
clusterProfiler
enrichKEGG
gseKEGG
3.3 years ago
yurigorelik
▴ 10
0
votes
1
reply
526
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler
GeneSetEnrichment
enrichplot
updated 16 months ago by
Emilia
▴ 30 • written 17 months ago by
saw44
• 0
5
votes
13
replies
504
views
Getting error
enrichplot
clusterProfiler
org.Hs.eg.db
updated 9 weeks ago by
793345316
▴ 40 • written 9 weeks ago by
beslinail
• 0
0
votes
2
replies
352
views
Unable to open igraph.so even though the file is present.
enrichplot
clusterProfiler
R
7 months ago
Adarsh
• 0
0
votes
0
replies
351
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot
ReactomePA
clusterProfiler
similarity coefficients
emapplot
2.1 years ago
jan.soderman
• 0
0
votes
0
replies
351
views
EnrichGO
R
enrichplot
updated 9 months ago by
Kevin Blighe
3.5k • written 9 months ago by
Neha
• 0
2
votes
1
reply
251
views
Parsing geoms to enrichplot
enrichplot
21 months ago
Francois Marchildon
▴ 20
1
vote
1
reply
248
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler
enrichplot
heatplot
5 months ago
fatimaruizdelabastida
• 0
0
votes
1
reply
233
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 6 months ago by
lida
• 0 • written 6 months ago by
capricygcapricyg
• 0
1
vote
3
replies
201
views
GSVA and ssGSEA output differences
enrichment
GSVA
enrichplot
ssGSEA
updated 7 weeks ago by
Robert Castelo
★ 2.9k • written 7 weeks ago by
Davide
• 0
0
votes
1
reply
154
views
Cluster Profiler output not the same as Enrichr output
enrichplot
clusterProfiler
updated 7 weeks ago by
ftamiro
• 0 • written 3 months ago by
angkoo
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: broken chain import in liftOver
by
Marcel Ramos
570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
by
James W. MacDonald
59k
See `removeBatchEffect` in the `limma` package.
Comment: GDCdownload Directory Problem :(
by
Marcel Ramos
570
FWIW, `TCGAutils` is not a related package.
Comment: help please!
by
1051444231
• 0
I have updated Rtools
Comment: help please!
by
1051444231
• 0
> BiocManager::install("AnnotationDbi",force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' …
Votes
Answer: broken chain import in liftOver
Answer: toGRanges help!
Answer: toGRanges help!
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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