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Showing :
enrichplot
•
reset
2
votes
6
replies
6.0k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot
clusterProfiler
3.3 years ago • updated 3.2 years ago
Emilia
▴ 30
1
vote
3
replies
5.1k
views
GSVA and ssGSEA output differences
enrichment
GSVA
enrichplot
ssGSEA
updated 24 months ago by
Robert Castelo
★ 3.1k • written 24 months ago by
Davide
• 0
5
votes
13
replies
4.0k
views
Getting error
enrichplot
clusterProfiler
org.Hs.eg.db
updated 2.0 years ago by
793345316
▴ 40 • written 2.0 years ago by
beslinail
• 0
8
votes
5
replies
3.8k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler
enrichplot
4.9 years ago • updated 22 months ago
charles.foster
▴ 160
1
vote
4
replies
3.7k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq
clusterProfiler
enrichplot
updated 24 months ago by
Lihe
• 0 • written 2.7 years ago by
jiro.becker
• 0
0
votes
3
replies
3.5k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler
enrichplot
clusterpro
doseR
dose
updated 20 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
rama
▴ 10
3
votes
5
replies
3.0k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler
enrichplot
cnetplot
GuangchuangYu
updated 19 months ago by
Guangchuang Yu
★ 1.2k • written 22 months ago by
adR
▴ 30
2
votes
4
replies
2.5k
views
enrichDGN result can't be visualised by barplot
enrichplot
2.5 years ago
Pahi
▴ 10
2
votes
3
replies
2.1k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi
GO
clusterProfiler
enrichplot
ensembldb
updated 18 months ago by
merv
▴ 120 • written 18 months ago by
simone.nevills
▴ 10
2
votes
4
replies
2.0k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler
enrichplot
cnetplot
updated 4.2 years ago by
James W. MacDonald
65k • written 4.2 years ago by
anders.tondell
▴ 30
0
votes
1
reply
1.9k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot
enrichplot
clusterProfiler
compareCluster
updated 4.2 years ago by
Guido Hooiveld
★ 3.9k • written 4.2 years ago by
rapmic
• 0
0
votes
5
replies
1.8k
views
How can I limit the number of displayed genes in heatplot
heatplot
enrichplot
updated 7 months ago by
ruba-mahmoud
• 0 • written 15 months ago by
Melanie
• 0
0
votes
1
reply
1.5k
views
Treeplot by enrichplot
clusterProfiler
enrichplot
treeplot
updated 17 months ago by
Guangchuang Yu
★ 1.2k • written 18 months ago by
g.neri19
• 0
0
votes
0
replies
1.4k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map
emapplot
enrichplot
enrichMap
DOSE
5.8 years ago
jan.soderman
• 0
0
votes
2
replies
1.4k
views
Unable to open igraph.so even though the file is present.
enrichplot
clusterProfiler
R
2.5 years ago
Adarsh
• 0
1
vote
1
reply
1.4k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler
enrichplot
heatplot
2.3 years ago
fatimaruizdelabastida
• 0
0
votes
1
reply
1.3k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler
GeneSetEnrichment
enrichplot
updated 3.2 years ago by
Emilia
▴ 30 • written 3.3 years ago by
saw44
• 0
2
votes
4
replies
1.3k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot
clusterProfiler
10 months ago
Tyroone
• 0
0
votes
1
reply
1.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 2.4 years ago by
lida
• 0 • written 2.4 years ago by
capricygcapricyg
▴ 10
0
votes
0
replies
1.2k
views
EnrichGO
R
enrichplot
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
Neha
• 0
0
votes
3
replies
1.2k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot
GSEA
clusterProfiler
updated 5 months ago by
Fatemeh
• 0 • written 7 months ago by
Cen
• 0
0
votes
0
replies
1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot
clusterProfiler
enrichKEGG
gseKEGG
5.1 years ago
yurigorelik
▴ 10
0
votes
1
reply
1.1k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler
enrichplot
updated 12 months ago by
Guido Hooiveld
★ 3.9k • written 12 months ago by
GenoMexa
• 0
0
votes
1
reply
963
views
Cluster Profiler output not the same as Enrichr output
enrichplot
clusterProfiler
updated 24 months ago by
ftamiro
• 0 • written 2.1 years ago by
angkoo
▴ 10
0
votes
5
replies
931
views
plot enrichment results
enrichplot
clusterProfiler
updated 8 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
Manuela
• 0
0
votes
0
replies
920
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot
ReactomePA
clusterProfiler
similarity coefficients
emapplot
3.9 years ago
jan.soderman
• 0
0
votes
1
reply
919
views
Dotplot from enricher outputting very few genes
clusterProfiler
enrichplot
updated 21 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
Lucía
▴ 10
2
votes
6
replies
773
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
8 weeks ago • updated 5 weeks ago
Tobias
• 0
2
votes
1
reply
676
views
Parsing geoms to enrichplot
enrichplot
3.6 years ago
Francois Marchildon
▴ 20
0
votes
1
reply
614
views
Libraries loading error
DESeq2
clusterProfiler
enrichplot
updated 14 months ago by
Michael Love
41k • written 14 months ago by
joanna
• 0
0
votes
2
replies
532
views
enrichPlot error when plotting topGO results
topGO
enrichplot
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
nromerov
• 0
0
votes
0
replies
310
views
HeatPlot - Genes selections
enrichplot
stringr
heatplot
6 months ago
ruba-mahmoud
• 0
0
votes
1
reply
189
views
visualizing GSEA showCategory question
enrichplot
updated 9 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
Grace.Ciabattoni
• 0
2
votes
2
replies
186
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot
barplot
clusterProfiler
10 days ago
Eva
▴ 10
34 results • Page
1 of 1
Recent ...
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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