Bioconductor Enrichplot

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1.9k

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heatplot enrichplot

updated 7 months ago by ruba-mahmoud • 0 • written 16 months ago by Melanie • 0

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1.4k

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enrichplot clusterProfiler

11 months ago • updated 10 months ago Tyroone • 0

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1.2k

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enrichplot GSEA clusterProfiler

updated 5 months ago by Fatemeh • 0 • written 8 months ago by Cen • 0

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985

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enrichplot clusterProfiler

updated 9 months ago by Lluís Revilla Sancho ▴ 730 • written 9 months ago by Manuela • 0

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930

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enrichplot

11 weeks ago • updated 8 weeks ago Tobias • 0

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580

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topGO enrichplot

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by nromerov • 0

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336

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enrichplot stringr heatplot

7 months ago ruba-mahmoud • 0

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232

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enrichplot barplot clusterProfiler

4 weeks ago Eva ▴ 10

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226

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enrichplot

updated 12 weeks ago by James W. MacDonald 65k • written 12 weeks ago by Grace.Ciabattoni • 0

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115

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DOSE enrichplot clusterProfiler

updated 5 days ago by Guido Hooiveld ★ 3.9k • written 9 days ago by Lucie • 0

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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia) by christianhilton64 • 0

I'm less familiar with the specifics of GSVA, but I'm curious about the overall goal of this analysis. Could you provide a high-level summa…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k