Showing : ensembl • reset
2
votes
3
replies
193
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
18 days ago • updated 10 days ago kieran.short ▴ 10
2
votes
0
replies
78
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
5 weeks ago Benjamin ▴ 20
2
votes
3
replies
202
views
Ensembl non responsive
ensembl R
5 weeks ago ksci ▴ 10
2
votes
1
reply
125
views
Can Rsubread output use Ensembl gene IDs
Ensembl Rsubread
updated 7 weeks ago by 45k • written 7 weeks ago by ▴ 10
8
votes
9
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724
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 3 months ago by 15k • written 3 months ago by ▴ 30
0
votes
3
replies
246
views
biomaRT getBM() get stuck
biomaRt getbm ensembl
updated 4 months ago by ★ 5.5k • written 4 months ago by • 0
1
vote
0
replies
146
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
5 months ago mchakiachvili ▴ 20
15
votes
13
replies
763
views
celldex ensembl gene annotation issue
SingleR celldex HumanPrimaryCellAtlasData ensembl
updated 6 months ago by ▴ 10 • written 6 months ago by ▴ 20
0
votes
6
replies
454
views
Getting paralogus genes from biomart for mouse
biomart biomaRt Ensembl
updated 9 months ago by 3.5k • written 9 months ago by • 0
0
votes
2
replies
523
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
15 months ago • updated 12 months ago mchakiachvili ▴ 20
1
vote
1
reply
377
views
topGO question
Ensembl ensembldb
updated 17 months ago by 59k • written 17 months ago by • 0
0
votes
0
replies
317
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
17 months ago mchakiachvili ▴ 20
4
votes
8
replies
6.6k
views
Ensembl site unresponsive
ensembl biomart
updated 13 months ago by • 0 • written 19 months ago by ▴ 40
2
votes
11
replies
3.1k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 15 months ago by ★ 5.5k • written 20 months ago by • 0
4
votes
17
replies
1000
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 20 months ago by 3.5k • written 20 months ago by ▴ 10
0
votes
1
reply
448
views
News: Ensembl 101 hase been released
Ensembl BioMart News
21 months ago mchakiachvili ▴ 20
1
vote
3
replies
806
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 13 months ago by 3.5k • written 22 months ago by • 0
1
vote
0
replies
397
views
News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
2.0 years ago Johannes Rainer ★ 1.9k
1
vote
0
replies
271
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
2.1 years ago Thomas Maurel ▴ 790
0
votes
4
replies
331
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 2.1 years ago by 36k • written 2.1 years ago by • 0
1
vote
2
replies
756
views
getBM biomart ensembl Error report
biomaRt ensembl
updated 2.1 years ago by ★ 5.5k • written 2.1 years ago by • 0
0
votes
1
reply
650
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
2.1 years ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
368
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 2.1 years ago by 59k • written 2.1 years ago by • 0
0
votes
0
replies
199
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
2.2 years ago Astrid_Ensembl • 0
4
votes
4
replies
546
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 2.3 years ago by ★ 5.5k • written 2.3 years ago by ▴ 10
0
votes
1
reply
179
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 2.3 years ago by 36k • written 2.3 years ago by • 0
0
votes
0
replies
292
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
2.3 years ago Thomas Maurel ▴ 790
4
votes
11
replies
644
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 2.4 years ago by ★ 2.8k • written 2.4 years ago by ▴ 10
1
vote
3
replies
1.2k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
2.4 years ago dmgatti ▴ 10
0
votes
14
replies
580
views
Error while opening Mart with biomaRt package
software error ensembl biomart
2.4 years ago loicborcard01 • 0
0
votes
6
replies
341
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 2.6 years ago by ★ 5.5k • written 2.6 years ago by ★ 1.0k
0
votes
7
replies
1.1k
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 2.6 years ago by 59k • written 2.6 years ago by ▴ 30
0
votes
0
replies
376
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
2.6 years ago Thomas Maurel ▴ 790
0
votes
1
reply
293
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt Ensembl
updated 2.8 years ago by ★ 5.5k • written 2.8 years ago by • 0
0
votes
3
replies
517
views
external_gene_id attribute removed from new biomaRt version
biomaRt Ensembl Ensemblplants
2.8 years ago Didi ▴ 10
1
vote
0
replies
408
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
2.9 years ago Johannes Rainer ★ 1.9k
1
vote
0
replies
325
views
News: Ensembl 97 has been released
biomart ensembl e97 News
2.9 years ago James Allen ▴ 10
10
votes
8
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1.3k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
2.9 years ago m93 ▴ 10
0
votes
1
reply
585
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart ensembl R Bioconductor
2.9 years ago lbuo • 0
0
votes
4
replies
738
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 2.9 years ago by ★ 5.5k • written 2.9 years ago by • 0
3
votes
2
replies
537
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 2.9 years ago by ★ 5.5k • written 2.9 years ago by ▴ 10
1
vote
1
reply
369
views
Gene biotype for a given symbol
ensembl
updated 2.9 years ago by ★ 1.9k • written 2.9 years ago by • 0
1
vote
3
replies
923
views
Scan error using biomart getBM with version option and host set
biomart ensembl getbm
3.0 years ago Marc Saric ▴ 70
2
votes
0
replies
414
views
News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
updated 3.0 years ago by • 0 • written 3.1 years ago by 3.1k
6
votes
5
replies
2.6k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 3.0 years ago by 59k • written 3.0 years ago by ▴ 80
0
votes
0
replies
351
views
News: Ensembl 96 has been released
ensembl biomart biomaRt e96 news News
3.1 years ago amonida ▴ 20
4
votes
5
replies
764
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 3.1 years ago by 59k • written 3.1 years ago by ▴ 10
0
votes
0
replies
485
views
News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationhub annotationdata ensembl gtf 2bit News
3.3 years ago shepherl 3.1k
0
votes
1
reply
496
views
News: Ensembl 95 has been released
ensembl biomart biomaRt e95 News
3.4 years ago Thomas Maurel ▴ 790
2
votes
3
replies
615
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
3.5 years ago rtwest • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: UniprotKB AC/ID to Entrez ID Conversion by James W. MacDonald 59k
I fixed this when Bioc 3.13 was the release version, so it should work in 3.14 and the current release. ``` > up <- UniProt.ws() > input …
Answer: ashr vs apeglm for interaction data by Michael Love 36k
Can you show the MA plot for these two analyses? Also for a gene with a large LFC from ashr, can you show plotCounts?
Comment: Robust Multi-array Average could get negative value or not? by Yang Shi • 0
Got the point sir~ Thanks so much!
Comment: Robust Multi-array Average could get negative value or not? by James W. MacDonald 59k
Because it's a small number.
Comment: Robust Multi-array Average could get negative value or not? by Yang Shi • 0
Thanks for your quick reply sir! Could you tell me why 4 which you selected here?
Votes
Answer: Robust Multi-array Average could get negative value or not?
Answer: Robust Multi-array Average could get negative value or not?
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Awards • All
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Scholar to SamGG ▴ 270
Prophet to johnmcma ▴ 10
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