Biostar Ensembl

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412

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biomaRt ensembldb ensembl

5 months ago • updated 11 weeks ago jamie.gearing ▴ 60

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298

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biomaRt ensembldb ensembl

written 5 months ago by Louisse ▴ 10

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265

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Ensembl biomaRt

7 months ago Hector • 0

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3.0k

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ensembl biomaRt R

updated 4 months ago by SE ▴ 10 • written 11 months ago by kieran.short ▴ 30

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351

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ensembl biomaRt ensembldb

11 months ago Benjamin ▴ 20

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694

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ensembl R

11 months ago ksci ▴ 10

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biomart R ensembl

updated 6 weeks ago by Kevin Blighe 3.8k • written 2.7 years ago by rykerklie7 • 0

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 5 months ago by Johannes Rainer ★ 2.0k • written 4.4 years ago by Guido Hooiveld ★ 3.6k

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Answer: RPPA data (Proteomics analysis) by Gordon Smyth 47k

Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`. The limma results i…

Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k

Something like what? I advised you to use "all treatment factors" and use the "whole design matrix" but you've done the opposite, omitting…

Comment: Full list of differential genes not obtained in topTable by Ankita • 0

thank you I tried it and it worked.

Answer: Full list of differential genes not obtained in topTable by Gordon Smyth 47k

When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …

Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth Meaning, something like the the below? filterByExpr (y)

Votes

A: Factor levels and Differential Expression analysis: Error in `contrasts<-`(`*tmp