Biostar Ensembl

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2.4k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 5 months ago by Johannes Rainer ★ 2.0k • written 4.3 years ago by Guido Hooiveld ★ 3.6k

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2.9k

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ensembl biomaRt R

updated 4 months ago by SE ▴ 10 • written 10 months ago by kieran.short ▴ 30

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382

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biomaRt ensembldb ensembl

4 months ago • updated 9 weeks ago jamie.gearing ▴ 60

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1.4k

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biomart R ensembl

updated 4 weeks ago by Kevin Blighe 3.8k • written 2.7 years ago by rykerklie7 • 0

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681

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ensembl R

11 months ago ksci ▴ 10

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285

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biomaRt ensembldb ensembl

written 5 months ago by Louisse ▴ 10

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454

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Ensembl Rsubread

updated 11 months ago by Gordon Smyth 47k • written 11 months ago by agustin.gonvi ▴ 10

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259

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Ensembl biomaRt

7 months ago Hector • 0

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345

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ensembl biomaRt ensembldb

11 months ago Benjamin ▴ 20

9 results • Page 1 of 1

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Answer: [limma::kegga] Pathway names all NA by Gordon Smyth 47k

This is due to a change in the KEGG website. I updated limma a month ago to fix the problem, so just reinstall limma and the problem will b…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

That's great. Thank you for clarifying the confusion. Cheers,

Comment: minfi support of illumina Infinium methylationEPIC v2.0 by luca.s ▴ 40

Tank you James. All fine, but for preprocessIllumina, which apparently won't work

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…

Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Votes

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Are polynomial contrasts for a time factor possible in DESeq2?

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Awards • All

Scholar to Gordon Smyth 47k

Popular Question to Robert Castelo ★ 3.0k