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Showing :
ensemblVEP
•
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0
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replies
124
views
RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
10 weeks ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
378
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 11 months ago by
Michael Love
41k • written 11 months ago by
DHARMESH
• 0
2
votes
3
replies
1.4k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
15 months ago
jtaylor-predicine
• 0
0
votes
1
reply
757
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 2.2 years ago by
Kevin Blighe
★ 3.9k • written 2.2 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.3k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.1 years ago • updated 2.9 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.1k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
4.7 years ago
ycchang
• 0
2
votes
3
replies
1.4k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 5.0 years ago by
Valerie Obenchain
★ 6.8k • written 5.0 years ago by
mumichae
▴ 20
2
votes
5
replies
2.2k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
patrick.turko
▴ 10
0
votes
4
replies
1.2k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.0 years ago by
shepherl
3.8k • written 6.0 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.1k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
6.9 years ago
mlrubio
• 0
0
votes
0
replies
1.7k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
6.9 years ago
mikko.arvas
• 0
0
votes
1
reply
854
views
ensemblVEP problem with MySQL database
ensemblvep
7.6 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.3k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.0k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
2.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.2 years ago by
Valerie Obenchain
★ 6.8k • written 10.2 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
10.2 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.3k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
Guest User
★ 13k
0
votes
5
replies
1.9k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 11.0 years ago by
Valerie Obenchain
★ 6.8k • written 11.0 years ago by
Guest User
★ 13k
19 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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