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ensemblvep
•
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0
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replies
120
views
RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
10 weeks ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
375
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 11 months ago by
Michael Love
41k • written 11 months ago by
DHARMESH
• 0
2
votes
3
replies
1.4k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
15 months ago
jtaylor-predicine
• 0
0
votes
1
reply
756
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 2.2 years ago by
Kevin Blighe
★ 3.9k • written 2.2 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.3k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.1 years ago • updated 2.9 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.1k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
4.7 years ago
ycchang
• 0
2
votes
3
replies
1.4k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 5.0 years ago by
Valerie Obenchain
★ 6.8k • written 5.0 years ago by
mumichae
▴ 20
2
votes
5
replies
2.2k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
patrick.turko
▴ 10
0
votes
4
replies
1.2k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.0 years ago by
shepherl
3.8k • written 6.0 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.1k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
6.9 years ago
mlrubio
• 0
0
votes
0
replies
1.6k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
6.9 years ago
mikko.arvas
• 0
0
votes
1
reply
854
views
ensemblVEP problem with MySQL database
ensemblvep
7.6 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.3k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.0k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
2.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.2 years ago by
Valerie Obenchain
★ 6.8k • written 10.2 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
10.2 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
10.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
Guest User
★ 13k
0
votes
5
replies
1.9k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 11.0 years ago by
Valerie Obenchain
★ 6.8k • written 11.0 years ago by
Guest User
★ 13k
19 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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★ 2.0k
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Robert Castelo
★ 3.1k
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Peter Langfelder
★ 2.9k
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Hervé Pagès
16k
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