Biostar Entrez

Showing : entrez • reset

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1.9k

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microarray limma kegg ENTREZ enrichment analysis

updated 19 months ago by Gordon Smyth 43k • written 19 months ago by omarrafiqued ▴ 50

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785

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annotation entrez gene ids software error

updated 2.5 years ago by Gordon Smyth 43k • written 2.5 years ago by Raito92 ▴ 50

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537

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ensembl entrez biomart org.hs.eg.db

updated 2.8 years ago by James W. MacDonald 58k • written 2.8 years ago by bettina.budeus • 0

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746

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gage annotationdbi entrez ensembl

3.6 years ago colaneri ▴ 30

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1.0k

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conversion symbol entrez

updated 6.0 years ago by James W. MacDonald 58k • written 6.0 years ago by dalloliogm ▴ 40

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Comment: rtracklayer: error in importing bigwig file in r in windows by Leonardo Collado Torres ▴ 930

Hi, `rtracklayer::import.bw()` is supposed to work on Windows nowadays, but well, I see that I still avoid it on several pieces of `derfin…

Answer: Microarray - Illumina Metadata by James W. MacDonald 58k

It's not exactly clear to me what you are after, but I'll take a stab at it. First off you probably want to read in using the `GEOquery` pa…

Answer: Can VST be run without runing DESeq or estimateSizeFactors by ATpoint ▴ 850

Just run it, the necessary steps are taken care of internally. You do not have to do anything other than `vst()`.

Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k

Hi, just in case for future users with a similar problem. The package doesn't seem to work with the resources downloaded from the Annotatio…

Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0

EDIT: Ignore this, re-read the warning message in more detail (belatedly). I am now moving the cache. Thanks for the reply, I have since u…

Votes

A: Extracting normalized counts in MEDIPS

Creating qPCRset for nondetects anlaysis from QuantStudio data

Comment: Extracting normalized counts in MEDIPS

Creating qPCRset for nondetects anlaysis from QuantStudio data

Answer: DESeq2 fold change filtering

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Prophet to prodhan82 ▴ 10