Showing : entrez • reset
6
votes
6
replies
3.2k
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Finding enriched pathways from a gene list.
microarray limma kegg ENTREZ enrichment analysis
updated 2.5 years ago by 46k • written 2.5 years ago by ▴ 50
6
votes
2
replies
1.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 3.3 years ago by 46k • written 3.3 years ago by ▴ 60
2
votes
1
reply
1.1k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 3.7 years ago by 60k • written 3.7 years ago by • 0
0
votes
3
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1.1k
views
How to produce a dataframe with unique ENTREZID to use in gage?
gage annotationdbi entrez ensembl
4.5 years ago colaneri ▴ 30
3
votes
3
replies
1.2k
views
Does AnnotationHub replaces AnnotationDbi for ID conversion (e.g. entrez, refseq, symbols)?
conversion symbol entrez
updated 6.9 years ago by 60k • written 6.9 years ago by ▴ 40
5 results • Page 1 of 1
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Comment: IsoformSwitchAnalyzeR package on mouse data by bpshtiwan ▴ 10
Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best
Comment: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws by James W. MacDonald 60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks by Tiago C. Silva ▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks by Marcel Ramos 570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
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