Bioconductor Entrez

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4.7k

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microarray limma kegg ENTREZ enrichment analysis

updated 3.8 years ago by Gordon Smyth 48k • written 3.8 years ago by omarrafiqued ▴ 50

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1.9k

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annotation entrez gene ids software error

updated 4.6 years ago by Gordon Smyth 48k • written 4.6 years ago by Raito92 ▴ 60

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1.5k

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ensembl entrez biomart org.hs.eg.db

updated 5.0 years ago by James W. MacDonald 64k • written 5.0 years ago by bettina.budeus • 0

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1.7k

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gage annotationdbi entrez ensembl

5.8 years ago colaneri ▴ 30

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1.5k

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conversion symbol entrez

updated 8.2 years ago by James W. MacDonald 64k • written 8.2 years ago by dalloliogm ▴ 50

5 results • Page 1 of 1

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k