Showing : entrez • reset
6
votes
6
replies
2.8k
views
Finding enriched pathways from a gene list.
microarray limma kegg ENTREZ enrichment analysis
updated 2.2 years ago by 45k • written 2.3 years ago by ▴ 50
6
votes
2
replies
1.1k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 3.1 years ago by 45k • written 3.1 years ago by ▴ 60
2
votes
1
reply
1.0k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 3.4 years ago by 59k • written 3.4 years ago by • 0
0
votes
3
replies
966
views
How to produce a dataframe with unique ENTREZID to use in gage?
gage annotationdbi entrez ensembl
4.2 years ago colaneri ▴ 30
3
votes
3
replies
1.2k
views
Does AnnotationHub replaces AnnotationDbi for ID conversion (e.g. entrez, refseq, symbols)?
conversion symbol entrez
updated 6.7 years ago by 59k • written 6.7 years ago by ▴ 40
5 results • Page 1 of 1
Recent ...
Replies
Answer: EnrichGO not working with db created from annotationhub by Lucía • 0
Hi, thanks so much for all your replies and running the code and confirming. I have not seen any GO term annotations for Cannabis so far…
Comment: TPM data Differential expression analysis by Gordon Smyth 45k
I have nothing to add my previous answer, which seems quite clear and umbiguous.
Answer: Difference between raw counts and featureCounts for DESeq2 by swbarnes2 ★ 1.0k
The count output from featureCounts is suitable for use with DESeq.
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70
Hi H. Do you have any clues what the bug or problem could be? thanks. Jiping
Answer: DESeq2 paired design: Differential list comparing fold changes by swbarnes2 ★ 1.0k
Sounds like you want interactions: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#interactions
Votes
Comment: Case Studies Data Missing in Rsubread
Answer: rtracklayer S.h
Answer: rtracklayer S.h
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Awards • All
Scholar to Gordon Smyth 45k
Scholar to jared.andrews07 ▴ 30
Scholar to vanbelj ▴ 10
Scholar to James W. MacDonald 59k
Popular Question to Johannes Rainer ★ 1.9k
Locations • All
Denver, University of Colorado Anschutz Medical Campus, 2 minutes ago
United States, 4 minutes ago
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia, 19 minutes ago
Canada, 26 minutes ago
United States, 50 minutes ago
Traffic: 274 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6