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epicarray
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Struggle with the replicates of epic array data
limma
epicarray
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
10 days ago • updated 6 days ago
Melisa Tecik
• 0
0
votes
5
replies
909
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 13 months ago by
James W. MacDonald
67k • written 13 months ago by
Jitendra
▴ 10
5
votes
5
replies
1.1k
views
limma output for epic array methylation data
linearregression
epicarray
MethylationArray
limma
15 months ago
Jitendra
▴ 10
0
votes
3
replies
1.3k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 18 months ago by
Basti
▴ 780 • written 18 months ago by
Jitendra
▴ 10
0
votes
2
replies
1.4k
views
Error in loading file using champ.load() from ChAMP package
champ.load
epicarray
ChAMP
methylationArrayAnalysis
19 months ago
arisarkar88
▴ 40
0
votes
2
replies
1.6k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis
EPICarray
ChAMP
Champ.SVD
3.7 years ago
arisarkar88
▴ 40
3
votes
4
replies
3.4k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 7.2 years ago by
rcavalca
▴ 140 • written 7.2 years ago by
karthikrpad
▴ 10
7 results • Page
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Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
Hi, what's the output from `dim(spe)`?
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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