Showing : epigenetics • reset
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limma with interaction term
R biostatistics limma Epigenetics
10 weeks ago • updated 8 weeks ago Jitendra ▴ 10
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5
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error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 6 months ago by 65k • written 6 months ago by ▴ 10
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825
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DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago Jitendra ▴ 10
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Further analysis after limma regression output
statistics Epigenetics limma
updated 7 months ago by 65k • written 7 months ago by ▴ 10
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combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
13 months ago Jitendra ▴ 10
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550
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How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
13 months ago Jitendra ▴ 10
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3
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932
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batch effect in EPIC array data
statistics Epigenetics R
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
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419
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rnbeads inference
epigenetics RnBeads
14 months ago Jitendra ▴ 10
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589
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
17 months ago whduke • 0
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825
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Job: Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation SingleCell Autism Neurogenesis Epigenetics
18 months ago sudhir.thakurela • 0
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Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
22 months ago xubeisi • 0
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1.3k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
23 months ago Jitendra ▴ 10
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556
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normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.1 years ago Jitendra ▴ 10
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
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8
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1.8k
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error in RnBeads installation
Epigenetics RnBeads R
2.1 years ago Jitendra ▴ 10
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2
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1.7k
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Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 3.4 years ago by 50k • written 3.4 years ago by ▴ 20
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago Shamith.Samarajiwa ▴ 180
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819
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.1 years ago rmf ▴ 20
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1.0k
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.1 years ago rmf ▴ 20
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Job: PhD computational position - Milan
epigenetics transcription computational biology Job
6.8 years ago mattia pelizzola ▴ 200
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1
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1.7k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.1 years ago by ▴ 60 • written 7.2 years ago by ▴ 120
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1.6k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90
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News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
7.6 years ago Yuan Tian ▴ 90
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Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
8.1 years ago asharm37 • 0
1
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
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ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
8.5 years ago jdangelo • 0
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Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
10.0 years ago Brian Herb ▴ 80
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
10.3 years ago Holger Klein ▴ 20
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
11.2 years ago stefano iacus ▴ 430
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IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
12.2 years ago Guest User ★ 13k
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how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 12.4 years ago by 65k • written 12.4 years ago by ▴ 30
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Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
12.6 years ago Martin Zenke ▴ 10
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.7 years ago mattia pelizzola ▴ 200
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
12.7 years ago stefano iacus ▴ 430
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Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
12.7 years ago Qiong Lin ▴ 10
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3
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2.5k
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edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 12.9 years ago by ▴ 320 • written 12.9 years ago by ▴ 260
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
14.5 years ago qPCR Platform - the reference in real-t… ▴ 170
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2.2k
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pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ★ 1.1k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
14.8 years ago Joern Toedling ▴ 450
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1.2k
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
15.1 years ago Vincent Detours ▴ 80
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.2 years ago Michael Lawrence ▴ 620
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
15.4 years ago Dick Beyer ★ 1.4k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
15.8 years ago Martin Morgan 25k
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
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1.2k
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
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1.8k
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
16.0 years ago Julian Lee ▴ 140
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1.6k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
16.3 years ago Jean Yee Hwa Yang ▴ 130
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1.3k
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Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
16.4 years ago French, Jef NIH/NIEHS ▴ 30
49 results • Page 1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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