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Showing :
epigenetics
•
reset
0
votes
4
replies
276
views
limma with interaction term
R
biostatistics
limma
Epigenetics
7 weeks ago • updated 4 weeks ago
Jitendra
▴ 10
0
votes
5
replies
544
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
Jitendra
▴ 10
3
votes
4
replies
772
views
DMRcate design
Epigenetics
EpigeneticsWorkflow
DMRcate
6 months ago
Jitendra
▴ 10
1
vote
1
reply
313
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Jitendra
▴ 10
0
votes
0
replies
445
views
combat for batch effect correction in EPIC array data
Epigenetics
combat
EPIC
12 months ago
Jitendra
▴ 10
0
votes
0
replies
519
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
13 months ago
Jitendra
▴ 10
0
votes
3
replies
872
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 13 months ago by
Lluís Revilla Sancho
▴ 730 • written 13 months ago by
Jitendra
▴ 10
0
votes
0
replies
394
views
rnbeads inference
epigenetics
RnBeads
14 months ago
Jitendra
▴ 10
0
votes
0
replies
563
views
Job:
EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq
Transcriptomics
Pathways
Epigenetics
RNASeq
16 months ago
whduke
• 0
0
votes
0
replies
791
views
Job:
Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation
SingleCell
Autism
Neurogenesis
Epigenetics
17 months ago
sudhir.thakurela
• 0
0
votes
0
replies
758
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
21 months ago
xubeisi
• 0
0
votes
6
replies
1.2k
views
regression analysis for epic array methylation data using limma
limma
Epigenetics
STATISTICS
R
22 months ago
Jitendra
▴ 10
0
votes
0
replies
536
views
normalisation options in RnBeads
Epigenetics
RnBeads
R
Bioconducter
2.0 years ago
Jitendra
▴ 10
0
votes
0
replies
675
views
filtering options in RnBeads for array data
Epigenetics
RnBeads
MethylationArrayData
methylationArrayAnalysis
2.0 years ago
Jitendra
▴ 10
0
votes
8
replies
1.8k
views
error in RnBeads installation
Epigenetics
RnBeads
R
2.1 years ago • updated 2.0 years ago
Jitendra
▴ 10
0
votes
2
replies
1.6k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
Jeff
▴ 20
0
votes
0
replies
949
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
4.1 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.0k
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.0 years ago
rmf
▴ 20
0
votes
0
replies
809
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.0 years ago
rmf
▴ 20
0
votes
0
replies
1.1k
views
Job:
PhD computational position - Milan
epigenetics
transcription
computational biology
Job
6.7 years ago
mattia pelizzola
▴ 200
0
votes
1
reply
1.7k
views
Epigenetic clock (Horvath): package?
methylation
illimina 450k methylation
epigenetics
minfi
updated 7.0 years ago by
Wade Davis
▴ 60 • written 7.2 years ago by
Brian Smith
▴ 120
0
votes
1
reply
1.6k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
7.4 years ago • updated 7.2 years ago
Yuan Tian
▴ 90
0
votes
0
replies
1.4k
views
News:
ChAMP2 is online
epigenetics
EPIC
450K
ChAMP
News
7.5 years ago
Yuan Tian
▴ 90
0
votes
0
replies
2.7k
views
Job:
Bioinformatics Scientist position at Johns Hopkins
R
USA
Hopkins
GI Cancer
Epigenetics
Job
8.0 years ago
asharm37
• 0
1
vote
0
replies
1.7k
views
Job:
Post-doc Position in Epigenetic Bioinformatics
cancer
sequencing
epigenetics
computational biology
bioinformatics
Job
8.4 years ago
Yassen Assenov
▴ 10
0
votes
0
replies
1.6k
views
ChAMP: Error using champ.norm() function
ChAMP
methylation
epigenetics
8.4 years ago
jdangelo
• 0
0
votes
0
replies
1.5k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing
Epigenetics
PROcess
Sequencing
Epigenetics
PROcess
9.9 years ago
Brian Herb
▴ 80
0
votes
0
replies
1.8k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics
Infrastructure
Epigenetics
Infrastructure
10.2 years ago
Holger Klein
▴ 20
0
votes
0
replies
1.4k
views
[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
11.1 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.4k
views
IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics
Annotation
Network
Epigenetics
Annotation
Network
12.1 years ago
Guest User
★ 13k
0
votes
3
replies
1.3k
views
how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics
cdf
Epigenetics
cdf
updated 12.3 years ago by
James W. MacDonald
65k • written 12.3 years ago by
Nicholas Wong
▴ 30
0
votes
0
replies
1.3k
views
Position Assistant Professor Bioinformatics
Epigenetics
Epigenetics
12.6 years ago
Martin Zenke
▴ 10
0
votes
0
replies
1.8k
views
4 PhD positions in cancer computational biology
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
12.6 years ago
mattia pelizzola
▴ 200
0
votes
0
replies
1.4k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.6 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.3k
views
Head of Junior Research Group - Bioinformatics
Epigenetics
Epigenetics
12.6 years ago
Qiong Lin
▴ 10
0
votes
3
replies
2.5k
views
edgeR - multiple comparisions
Epigenetics
GO
edgeR
Epigenetics
GO
edgeR
updated 12.8 years ago by
Sridhara Gupta Kunjeti
▴ 320 • written 12.8 years ago by
Davis McCarthy
▴ 260
0
votes
0
replies
1.8k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA
qPCR
Epigenetics
GO
Visualization
Network
probe
microRNA
miRNA
qPCR
Epigenetics
14.4 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
2
replies
2.2k
views
pd.hugene.1.0.st.v1
Epigenetics
Annotation
oligo
Epigenetics
Annotation
oligo
updated 14.7 years ago by
Benilton Carvalho
★ 4.3k • written 14.7 years ago by
Mark Robinson
★ 1.1k
0
votes
0
replies
1.6k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
14.7 years ago
Joern Toedling
▴ 450
0
votes
0
replies
1.2k
views
Bioinformatics postdoc in Brussels
Sequencing
Epigenetics
Cancer
Breast
Sequencing
Epigenetics
Cancer
Breast
15.0 years ago
Vincent Detours
▴ 80
0
votes
0
replies
1.0k
views
browseGenome width question (rtracklayer)
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
15.2 years ago
Michael Lawrence
▴ 620
0
votes
0
replies
1.2k
views
sd==0 for some probesets when using gcrma
Microarray
Proteomics
Epigenetics
Normalization
GO
Cancer
hgu95av2
affy
graph
gcrma
GO
15.3 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 15.3 years ago by
dorothyc
▴ 140 • written 15.3 years ago by
James W. MacDonald
65k
0
votes
0
replies
1.3k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics
Cancer
probe
affy
xps
Epigenetics
Cancer
probe
affy
xps
15.7 years ago
Martin Morgan
25k
0
votes
1
reply
1.2k
views
Fwd: biomaRt column order
Epigenetics
biomaRt
Epigenetics
biomaRt
15.7 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
903
views
[ Re: Fwd: biomaRt column order]
Epigenetics
biomaRt
Epigenetics
biomaRt
15.7 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
1.7k
views
Bioinformatics Positions, National Cancer Centre Singapore
Microarray
Epigenetics
Cancer
Microarray
Epigenetics
Cancer
15.9 years ago
Julian Lee
▴ 140
0
votes
0
replies
1.6k
views
Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics
Bayesian
Cancer
Breast
Epigenetics
Bayesian
Cancer
Breast
16.2 years ago
Jean Yee Hwa Yang
▴ 130
0
votes
0
replies
1.3k
views
Bioinformatics positions
Microarray
Genetics
Proteomics
Epigenetics
Microarray
Genetics
Proteomics
Epigenetics
16.4 years ago
French, Jef NIH/NIEHS
▴ 30
49 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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