Biostar EstimateCellCounts

Showing : estimateCellCounts • reset

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1.1k

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minfi estimateCellCounts methylation

updated 5.1 years ago by Kasper Daniel Hansen 6.5k • written 5.1 years ago by stewart999 ▴ 10

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1.0k

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limma sva duplicatecorrelation estimatecellcounts

updated 4.7 years ago by Aaron Lun ★ 27k • written 4.7 years ago by wliao • 0

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1.1k

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minfi estimatecellcounts getSex preprocessQuantile

updated 4.0 years ago by Kasper Daniel Hansen 6.5k • written 4.0 years ago by fgc • 0

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643

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minfi estimatecellcounts

3.8 years ago a.webster • 0

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342

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minfi cell proportion estimateCellCounts DNA Methylation

2.3 years ago grayapply2009 • 0

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Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by James W. MacDonald 60k

I assume the politics have to do with the site-wide version of R? In over 20 years of using R, I have very rarely relied on an installation…

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by Kevin • 0

James, I really appreciate your quick response. It was very helpful to see that it worked on your end. It helped us narrow down the proble…

Votes

Answer: setting sizeFactors from scran :: caculateSumFactors.

Answer: ComplexHeatmap: Change font size of annotation axis values

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

A: svaseq: how many and which surrogate variables to pick

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Scholar to James W. MacDonald 60k

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