Bioconductor Estimatesizefactors

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292

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locfunc DESeq2 shorth estimateSizeFactors

8 weeks ago Hope ▴ 10

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845

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deseq2 estimatesizefactors

updated 5.5 years ago by Ryan C. Thompson ★ 7.9k • written 5.5 years ago by owenchapman1 • 0

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deseq2 LRT geometric mean estimatesizefactors model.matrix

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by carol.brunel • 0

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1.5k

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deseq2 estimatesizefactors

6.4 years ago Lauma R ▴ 10

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deseq2 error R estimatesizefactors zero

updated 2.0 years ago by LW • 0 • written 6.6 years ago by abhishek.yedugondla • 0

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3.8k

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deseq2 estimatesizefactors

updated 7.4 years ago by Steve Lianoglou ★ 13k • written 7.4 years ago by Assa Yeroslaviz ★ 1.5k

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deseq2 tximport rsem estimatesizefactors

8.0 years ago Hugo Varet ▴ 80

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deseq2 estimatesizefactors

updated 8.3 years ago by Michael Love 41k • written 8.3 years ago by ssabri ▴ 20

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phyloseq deseq2 estimatesizefactors

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by brandilyn.peters • 0

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estimatesizefactors deseq2

updated 8.5 years ago by Michael Love 41k • written 8.5 years ago by Mehmet Ilyas Cosacak • 0

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deseq2 estimatesizefactors

updated 9.1 years ago by Michael Love 41k • written 9.1 years ago by umut.caglar ▴ 10

11 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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