Bioconductor Estimatesizefactors

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287

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locfunc DESeq2 shorth estimateSizeFactors

8 weeks ago Hope ▴ 10

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5.5k

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deseq2 error R estimatesizefactors zero

updated 2.0 years ago by LW • 0 • written 6.5 years ago by abhishek.yedugondla • 0

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840

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deseq2 estimatesizefactors

updated 5.4 years ago by Ryan C. Thompson ★ 7.9k • written 5.4 years ago by owenchapman1 • 0

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1.2k

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deseq2 LRT geometric mean estimatesizefactors model.matrix

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by carol.brunel • 0

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1.5k

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deseq2 estimatesizefactors

6.4 years ago Lauma R ▴ 10

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3.8k

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deseq2 estimatesizefactors

updated 7.4 years ago by Steve Lianoglou ★ 13k • written 7.4 years ago by Assa Yeroslaviz ★ 1.5k

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2.1k

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deseq2 tximport rsem estimatesizefactors

7.9 years ago Hugo Varet ▴ 80

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9.5k

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deseq2 estimatesizefactors

updated 8.3 years ago by Michael Love 41k • written 8.3 years ago by ssabri ▴ 20

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1.9k

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phyloseq deseq2 estimatesizefactors

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by brandilyn.peters • 0

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estimatesizefactors deseq2

updated 8.5 years ago by Michael Love 41k • written 8.5 years ago by Mehmet Ilyas Cosacak • 0

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1.1k

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deseq2 estimatesizefactors

updated 9.1 years ago by Michael Love 41k • written 9.1 years ago by umut.caglar ▴ 10

11 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k