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kozo.nishida
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Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴
170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
•
0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back.
Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★
4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Comment: Can't post a question?
by
Aimee
•
0
I copied my text to a file in linux and ran:
```r
grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt
```
It highlighted everything that…
Answer: sva: get a sv for RIN scores
by
Gordon Smyth
52k
Surrogate variables are not constructed from known variates, so one doesn't get surrogate variables for RIN scores. I am guessing that the …
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