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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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11 months ago Maria Doyle ▴ 70
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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12 months ago Maria Doyle ▴ 70
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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12 months ago Maria Doyle ▴ 70
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News: Translation Hackathon (community event) announcement
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22 months ago kozo.nishida • 0
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.1 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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4.2 years ago shepherl 3.8k
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2018 Toronto Bioconductor Conference registration details?
conference event
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
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Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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Scholar to James W. MacDonald 65k
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Popular Question to Gordon Smyth 50k
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