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News:
RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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11 months ago
Maria Doyle
▴ 70
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Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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11 months ago
Maria Doyle
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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11 months ago
Maria Doyle
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Translation Hackathon (community event) announcement
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21 months ago
kozo.nishida
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BioCAsia Virtual Meeting, 15-18 October 2020
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Matthew Ritchie
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Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.1 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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bioconductor
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4.1 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
bioconductor
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4.1 years ago
shepherl
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Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
bioconductor
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4.2 years ago
shepherl
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4.2 years ago
shepherl
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4.2 years ago
shepherl
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2018 Toronto Bioconductor Conference registration details?
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updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
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Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Answer: Finding DEGs by using edgeR
by
Gordon Smyth
50k
I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
Answer: Log-cpm values from limma
by
Gordon Smyth
50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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