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Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C by ATpoint ★ 1.4k
Please provide an example of that sheet (at best after reading into R and then shared via `dput()`) if you are seeking help. In general the…
Comment: Which is the best type of data for correlation or survival analysis by Yang Shi • 0
Hi ATpoint, thanks for your reply and show me the thread. But there are still some questions: (1) **dds <- estimateSizeFactors(dds); ntd <…
Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C by swbarnes2 ★ 1.1k
Can't you just Google for a tutorial?
Comment: GSEA preranked analysis downstream of DEseq2 by hermidalc ▴ 10
Would using combining both as a ranking metric via `log2FC * -log10(p-value)` overcome these shortcomings? Or introduce new ones?
Comment: Which is the best type of data for correlation or survival analysis by ATpoint ★ 1.4k
Asked before: https://support.bioconductor.org/p/103464/
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Comment: what should be our references when 2 samples which I compare are treated and the
Comment: Which is the best type of data for correlation or survival analysis
A: GSEA preranked analysis downstream of DEseq2
Comment: batch effect
Comment: MEDIPS for chIP-Seq
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