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exomecopy
•
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1
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2
replies
1.2k
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Journal articles for whole exome sequencing
exomecopy
exon array analysis
CODEX
8.9 years ago
kaushal Raj Chaudhary
▴ 10
0
votes
0
replies
831
views
copyCountSegments(fit) failed exomeCopy
exomeCopy
exomeCopy
12.0 years ago
love
▴ 150
0
votes
1
reply
1.2k
views
copyCountSegments(fit) failed exomeCopy
exomeCopy
exomeCopy
updated 11.9 years ago by
love
▴ 150 • written 11.9 years ago by
Dan Spiegelman
▴ 10
0
votes
2
replies
1.0k
views
exomeCopy - no .Internal function 'cov' error
exomeCopy
exomeCopy
updated 11.7 years ago by
Martin Morgan
25k • written 11.7 years ago by
Lescai, Francesco
▴ 380
0
votes
4
replies
2.6k
views
error in exomeCopy - IRanges?
IRanges
exomeCopy
IRanges
exomeCopy
updated 11.6 years ago by
love
▴ 150 • written 11.6 years ago by
Lescai, Francesco
▴ 380
0
votes
4
replies
2.4k
views
exomeCopy - memory error
exomeCopy
exomeCopy
updated 11.5 years ago by
love
▴ 150 • written 11.5 years ago by
Lescai, Francesco
▴ 380
0
votes
0
replies
1.1k
views
ExomeCopy package error
Sequencing
exomeCopy
Sequencing
exomeCopy
11.3 years ago
Guest User
★ 13k
0
votes
1
reply
909
views
question about using exomeCopy on a single exome sample
exomeCopy
exomeCopy
updated 10.9 years ago by
Michael Love
41k • written 10.9 years ago by
Guru Ananda
▴ 10
0
votes
2
replies
1.4k
views
ExomeCopy error
exomeCopy
exomeCopy
updated 10.9 years ago by
Michael Love
41k • written 10.9 years ago by
Kevin Lee
▴ 40
0
votes
1
reply
1.2k
views
exomeCopy copy number setting
cnv
exomecopy
updated 8.3 years ago by
Michael Love
41k • written 8.3 years ago by
cafelumiere12
▴ 20
0
votes
1
reply
959
views
exomeCopy Posterior Probabilities
exomecopy
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
sruddy17
• 0
0
votes
3
replies
1.0k
views
exomeCopy error with compileCopyCountSegments
exomecopy
cnv
6.2 years ago
ramakrishnas
• 0
0
votes
3
replies
745
views
exomeCopy error in col name
exomecopy
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
chiara.rigobello
• 0
0
votes
4
replies
664
views
exomeCopy compileCopyCountSegments error
exomeCopy
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
kkyung412
• 0
0
votes
0
replies
543
views
Applying exomeCopy to call CNVs withouts controls considering batch effects
exomeCopy
CNV
WES
3.0 years ago
Cheng
• 0
0
votes
1
reply
496
views
Discrepancy between plot colours during exomeCopy tutorial
exomeCopy
updated 22 months ago by
Michael Love
41k • written 22 months ago by
joel.wallenius
• 0
0
votes
0
replies
880
views
Fwd: ExomeCopy package error
Sequencing
exomeCopy
Sequencing
exomeCopy
11.3 years ago
love
▴ 150
0
votes
1
reply
584
views
exomeCopy warning and error
exomeCopy
updated 22 months ago by
Michael Love
41k • written 22 months ago by
ef.kafantari
• 0
18 results • Page
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Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
James W. MacDonald
65k
Let's take a closer look. ``` > library(GEOquery) ## some random data > getGEOSuppFiles("GSE193983") > setwd("GSE193983/") > untar("GSE19…
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Votes
Comment: DEG Filtering
Answer: DEG Filtering
Answer: DEG Filtering
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
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James W. MacDonald
65k
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to
Gordon Smyth
50k
Popular Question
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rocanja
▴ 60
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rproendo
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Wolfgang RAFFELSBERGER
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