Bioconductor Exon

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DEXSeq exon_definition exon

updated 9 months ago by Alejandro Reyes ★ 1.9k • written 9 months ago by zhangpeng1202 • 0

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374

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exon AnnotationHubData

11 months ago mahima.g • 0

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823

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splicing Exon featureCounts subread DEXSeq

23 months ago NIK • 0

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635

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DEXSeq exon

updated 2.1 years ago by Alejandro Reyes ★ 1.9k • written 2.1 years ago by jochen • 0

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1.3k

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DEXSeq exon memory dispersions estimateDispersions

4.0 years ago andreismolnikov00 • 0

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1.4k

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Annotatr CDS Exon UTR

updated 6.2 years ago by rcavalca ▴ 140 • written 6.2 years ago by xie186 • 0

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2.8k

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rsubread featurecounts exon mRNAseq

updated 6.9 years ago by Wei Shi ★ 3.6k • written 6.9 years ago by inah ▴ 10

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1.8k

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rnaseq exon quasr

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by sven.schuierer • 0

8 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

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C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k