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exon
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0
votes
3
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2.8k
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read count summed over exons is greater tham the gene-level read count using featureCounts
rsubread
featurecounts
exon
mRNAseq
updated 6.9 years ago by
Wei Shi
★ 3.6k • written 6.9 years ago by
inah
▴ 10
0
votes
2
replies
1.8k
views
quasR - how are exon identifiers for exon counts determined
rnaseq
exon
quasr
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
sven.schuierer
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
1
vote
3
replies
1.3k
views
DEXSeq with large(ish) number of samples
DEXSeq
exon
memory
dispersions
estimateDispersions
4.0 years ago
andreismolnikov00
• 0
1
vote
5
replies
828
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 9 months ago by
Alejandro Reyes
★ 1.9k • written 9 months ago by
zhangpeng1202
• 0
0
votes
1
reply
823
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
23 months ago
NIK
• 0
1
vote
1
reply
635
views
Increased number of exons in DEXSeq
DEXSeq
exon
updated 2.1 years ago by
Alejandro Reyes
★ 1.9k • written 2.1 years ago by
jochen
• 0
0
votes
0
replies
374
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
11 months ago
mahima.g
• 0
8 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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