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exonmap
•
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2
votes
20
replies
5.3k
views
Important r packages not available for R version 3.1.1
exonmap
exon array analysis
bioconductor
9.1 years ago
svlachavas
▴ 830
0
votes
7
replies
1.7k
views
exonmap/xmapcore error
exonmap
exonmap
updated 13.7 years ago by
Crispin Miller
★ 1.1k • written 13.7 years ago by
anupam sinha
▴ 270
0
votes
10
replies
1.6k
views
exonmap RMA function
Microarray
Cancer
affyPLM
exonmap
Microarray
Cancer
affyPLM
exonmap
updated 16.2 years ago by
Yuan Jian
▴ 250 • written 16.2 years ago by
Martin Morgan
25k
0
votes
9
replies
1.6k
views
specifications for exonmap database config file?
GO
exonmap
GO
exonmap
updated 15.3 years ago by
Heidi Dvinge
★ 2.0k • written 15.3 years ago by
Joseph Fass
▴ 70
0
votes
6
replies
1.5k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf
exonmap
xps
cdf
exonmap
xps
updated 15.7 years ago by
cstrato
★ 3.9k • written 15.7 years ago by
De Bondt, An-7114 [PRDBE]
▴ 190
0
votes
4
replies
1.4k
views
Problem with some exonmap X.to.Y functions
exonmap
exonmap
updated 16.6 years ago by
Crispin Miller
★ 1.1k • written 16.6 years ago by
Sophie Gallina
▴ 40
0
votes
4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival
cdf
genefilter
affy
simpleaffy
plier
exonmap
Survival
cdf
genefilter
affy
updated 16.6 years ago by
James W. MacDonald
65k • written 16.6 years ago by
bruce
▴ 20
2
votes
1
reply
1.3k
views
Best way to do quality control and analysis on Exon arrays
Annotation
Cancer
affy
exonmap
Annotation
Cancer
affy
exonmap
updated 8.6 years ago by
nicholaserho
▴ 10 • written 14.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
6
replies
1.2k
views
exonmap install
affy
exonmap
affy
exonmap
updated 17.0 years ago by
James W. MacDonald
65k • written 17.0 years ago by
Dick Beyer
★ 1.4k
0
votes
2
replies
1.1k
views
exon array annotation files
Annotation
Cancer
cdf
exonmap
Annotation
Cancer
cdf
exonmap
updated 14.5 years ago by
Michal Okoniewski
▴ 190 • written 14.5 years ago by
Paul Leo
▴ 970
0
votes
2
replies
1.1k
views
Affy Exon arrays
affy
exonmap
affy
exonmap
updated 14.8 years ago by
cstrato
★ 3.9k • written 14.8 years ago by
Tarca, Adi
▴ 570
0
votes
0
replies
1.1k
views
Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
Annotation
Normalization
probe
affy
PROcess
oligo
exonmap
Annotation
Normalization
probe
15.3 years ago
Alexander C Cambon
▴ 30
0
votes
1
reply
1.1k
views
Exonmap mapping problems
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
updated 16.6 years ago by
Michal Okoniewski
▴ 120 • written 16.6 years ago by
Tore Eriksson
▴ 10
0
votes
2
replies
1.0k
views
exonmap questions
affy
PROcess
exonmap
affy
PROcess
exonmap
updated 16.3 years ago by
James W. MacDonald
65k • written 16.3 years ago by
Jianping Jin
▴ 890
0
votes
1
reply
1.0k
views
exonmap/xmapcore and splicing.index
exonmap
xmapcore
exonmap
xmapcore
updated 13.5 years ago by
Michal Okoniewski
▴ 190 • written 13.5 years ago by
Peter Saffrey
▴ 70
0
votes
2
replies
1.0k
views
problems with Affymetrix probes id using exonmap and xmapcore
Annotation
cdf
exonmap
xmapcore
Annotation
cdf
exonmap
xmapcore
12.9 years ago
Tim Yates
▴ 250
0
votes
1
reply
943
views
Easy way to map Exon array probes to coordinates?
Cancer
exonmap
xps
Cancer
exonmap
xps
updated 12.5 years ago by
cstrato
★ 3.9k • written 12.5 years ago by
wrighth
▴ 260
0
votes
0
replies
927
views
problem with function to interrogate x:Map (exonmap)
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
16.5 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
1
reply
910
views
exonmap question: rma (& plier) crashes
exonmap
exonmap
updated 15.6 years ago by
Crispin Miller
★ 1.1k • written 15.6 years ago by
Tae-Hoon Chung
▴ 70
0
votes
0
replies
909
views
Bioconductor Digest, Vol 73, Issue 8
Microarray
Annotation
GO
hgu133plus2
probe
biomaRt
flowViz
exonmap
Microarray
Annotation
15.1 years ago
ramesh aathe
▴ 10
0
votes
0
replies
904
views
exonmap problems with rma normalization
Normalization
cdf
exonmap
Normalization
cdf
exonmap
12.9 years ago
Gomez Moruno, Antonio
▴ 30
0
votes
0
replies
900
views
exonmap error & questions (Affy mouse exon arrays)
exonmap
exonmap
15.7 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
0
replies
889
views
Exonmap & xmapcore covdesc variable problem
affy
exonmap
xmapcore
affy
exonmap
xmapcore
11.8 years ago
Prime, John
▴ 10
0
votes
1
reply
883
views
exonMap problems
exonmap
exonmap
updated 13.9 years ago by
Tim Yates
▴ 250 • written 13.9 years ago by
Tobias Petri
▴ 40
0
votes
0
replies
866
views
R: Doubt about the use of xmapcore Vs exonmap
exonmap
xmapcore
exonmap
xmapcore
13.4 years ago
Manca Marco PATH
▴ 340
0
votes
1
reply
863
views
ExonMap and xmap package question
probe
limma
convert
exonmap
probe
limma
convert
exonmap
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
847
views
running exonmap package and chimp arrays
exonmap
exonmap
updated 15.1 years ago by
Michal Okoniewski
▴ 50 • written 15.1 years ago by
Pete Shepard
▴ 240
0
votes
0
replies
819
views
Human Affymetrix Exon microarrays
exonmap
exonmap
13.4 years ago
Ernest Turro
▴ 30
0
votes
0
replies
791
views
problems with Affymetrix probes id using exonmap and xmapcore
Annotation
cdf
exonmap
xmapcore
Annotation
cdf
exonmap
xmapcore
12.9 years ago
Gomez Moruno, Antonio
▴ 30
0
votes
0
replies
786
views
exonmap package - MySQL error
exonmap
exonmap
16.4 years ago
Dykema, Karl
▴ 90
0
votes
0
replies
740
views
exonmap and splicing index
limma
exonmap
limma
exonmap
15.0 years ago
Mathieu Parent
▴ 30
0
votes
0
replies
731
views
Exonmap to xmapcore
exonmap
xmapcore
exonmap
xmapcore
13.7 years ago
Fong Chun Chan
▴ 130
0
votes
0
replies
726
views
exonmap install problem
Microarray
exonmap
Microarray
exonmap
16.7 years ago
Sophie Gallina
▴ 40
0
votes
0
replies
719
views
Exonmap and Limma
limma
exonmap
limma
exonmap
15.0 years ago
Mathieu Parent
▴ 30
0
votes
1
reply
708
views
(no subject)
exonmap
xmapcore
exonmap
xmapcore
updated 13.4 years ago by
Marc Carlson
★ 7.2k • written 13.4 years ago by
Emma Lucas
▴ 10
0
votes
0
replies
692
views
Affy EXON Array: iterPLIER or RMA
affy
exonmap
affy
exonmap
15.9 years ago
juancui
▴ 10
0
votes
0
replies
663
views
bugs in exonmap?
exonmap
exonmap
15.9 years ago
Xin Zheng
▴ 30
0
votes
0
replies
658
views
[Fwd: Re: exonmap, xmap and xmapbridge]
exonmap
exonmap
16.2 years ago
Paul Hammer
▴ 220
0
votes
0
replies
629
views
Problem memory exonmap
exonmap
exonmap
15.1 years ago
Guido Leoni
▴ 200
0
votes
0
replies
625
views
[Fwd: exonmap install problem] Resolution note
exonmap
exonmap
16.6 years ago
Sophie Gallina
▴ 40
0
votes
0
replies
590
views
exonmap install problem
Cancer
exonmap
Cancer
exonmap
16.7 years ago
Seth Falcon
★ 7.4k
41 results • Page
1 of 1
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Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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