Showing : exonmap • reset
2
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20
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5.3k
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Important r packages not available for R version 3.1.1
exonmap exon array analysis bioconductor
9.2 years ago svlachavas ▴ 830
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10
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1.7k
views
exonmap RMA function
Microarray Cancer affyPLM exonmap Microarray Cancer affyPLM exonmap
updated 16.3 years ago by ▴ 250 • written 16.3 years ago by 25k
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7
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1.8k
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exonmap/xmapcore error
exonmap exonmap
updated 13.8 years ago by ★ 1.1k • written 13.8 years ago by ▴ 270
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4
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1.4k
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Problem with some exonmap X.to.Y functions
exonmap exonmap
updated 16.7 years ago by ★ 1.1k • written 16.7 years ago by ▴ 40
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2
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1.1k
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Affy Exon arrays
affy exonmap affy exonmap
updated 14.9 years ago by ★ 3.9k • written 14.9 years ago by ▴ 570
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2
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1.1k
views
exon array annotation files
Annotation Cancer cdf exonmap Annotation Cancer cdf exonmap
updated 14.6 years ago by ▴ 190 • written 14.6 years ago by ▴ 970
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1
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1.0k
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exonmap/xmapcore and splicing.index
exonmap xmapcore exonmap xmapcore
updated 13.6 years ago by ▴ 190 • written 13.6 years ago by ▴ 70
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6
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1.3k
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exonmap install
affy exonmap affy exonmap
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 1.4k
0
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1
reply
1.1k
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Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 10
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4
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1.3k
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problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 20
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2
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1.1k
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exonmap questions
affy PROcess exonmap affy PROcess exonmap
updated 16.4 years ago by 65k • written 16.4 years ago by ▴ 890
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6
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1.6k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
cdf exonmap xps cdf exonmap xps
updated 15.8 years ago by ★ 3.9k • written 15.8 years ago by ▴ 190
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1
reply
926
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exonmap question: rma (& plier) crashes
exonmap exonmap
updated 15.7 years ago by ★ 1.1k • written 15.7 years ago by ▴ 70
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9
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1.6k
views
specifications for exonmap database config file?
GO exonmap GO exonmap
updated 15.4 years ago by ★ 2.0k • written 15.4 years ago by ▴ 70
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1
reply
867
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running exonmap package and chimp arrays
exonmap exonmap
updated 15.1 years ago by ▴ 50 • written 15.1 years ago by ▴ 240
2
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1
reply
1.3k
views
Best way to do quality control and analysis on Exon arrays
Annotation Cancer affy exonmap Annotation Cancer affy exonmap
updated 8.7 years ago by ▴ 10 • written 14.8 years ago by ★ 1.9k
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1
reply
892
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exonMap problems
exonmap exonmap
updated 14.0 years ago by ▴ 250 • written 14.0 years ago by ▴ 40
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1
reply
722
views
(no subject)
exonmap xmapcore exonmap xmapcore
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ▴ 10
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1
reply
883
views
ExonMap and xmap package question
probe limma convert exonmap probe limma convert exonmap
13.4 years ago Julie Zhu ★ 4.3k
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2
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1.0k
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problems with Affymetrix probes id using exonmap and xmapcore
Annotation cdf exonmap xmapcore Annotation cdf exonmap xmapcore
13.0 years ago Tim Yates ▴ 250
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1
reply
963
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Easy way to map Exon array probes to coordinates?
Cancer exonmap xps Cancer exonmap xps
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 260
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0
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927
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Bioconductor Digest, Vol 73, Issue 8
Microarray Annotation GO hgu133plus2 probe biomaRt flowViz exonmap Microarray Annotation
15.1 years ago ramesh aathe ▴ 10
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0
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640
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Problem memory exonmap
exonmap exonmap
15.1 years ago Guido Leoni ▴ 200
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0
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752
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exonmap and splicing index
limma exonmap limma exonmap
15.1 years ago Mathieu Parent ▴ 30
0
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0
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944
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problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.6 years ago Wolfgang Raffelsberger ▴ 160
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0
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919
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exonmap problems with rma normalization
Normalization cdf exonmap Normalization cdf exonmap
13.0 years ago Gomez Moruno, Antonio ▴ 30
0
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0
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635
views
[Fwd: exonmap install problem] Resolution note
exonmap exonmap
16.7 years ago Sophie Gallina ▴ 40
0
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0
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809
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problems with Affymetrix probes id using exonmap and xmapcore
Annotation cdf exonmap xmapcore Annotation cdf exonmap xmapcore
13.0 years ago Gomez Moruno, Antonio ▴ 30
0
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0
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743
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Exonmap to xmapcore
exonmap xmapcore exonmap xmapcore
13.8 years ago Fong Chun Chan ▴ 130
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0
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611
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exonmap install problem
Cancer exonmap Cancer exonmap
16.7 years ago Seth Falcon ★ 7.4k
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0
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752
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exonmap install problem
Microarray exonmap Microarray exonmap
16.7 years ago Sophie Gallina ▴ 40
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0
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799
views
exonmap package - MySQL error
exonmap exonmap
16.5 years ago Dykema, Karl ▴ 90
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0
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672
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[Fwd: Re: exonmap, xmap and xmapbridge]
exonmap exonmap
16.2 years ago Paul Hammer ▴ 220
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0
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898
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Exonmap & xmapcore covdesc variable problem
affy exonmap xmapcore affy exonmap xmapcore
11.8 years ago Prime, John ▴ 10
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0
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676
views
bugs in exonmap?
exonmap exonmap
16.0 years ago Xin Zheng ▴ 30
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0
replies
706
views
Affy EXON Array: iterPLIER or RMA
affy exonmap affy exonmap
16.0 years ago juancui ▴ 10
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0
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914
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exonmap error & questions (Affy mouse exon arrays)
exonmap exonmap
15.8 years ago Wolfgang Raffelsberger ▴ 160
0
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0
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882
views
R: Doubt about the use of xmapcore Vs exonmap
exonmap xmapcore exonmap xmapcore
13.5 years ago Manca Marco PATH ▴ 340
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0
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1.1k
views
Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
Annotation Normalization probe affy PROcess oligo exonmap Annotation Normalization probe
15.4 years ago Alexander C Cambon ▴ 30
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0
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837
views
Human Affymetrix Exon microarrays
exonmap exonmap
13.5 years ago Ernest Turro ▴ 30
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0
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744
views
Exonmap and Limma
limma exonmap limma exonmap
15.1 years ago Mathieu Parent ▴ 30
41 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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