Showing : exons • reset
3
votes
7
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1.5k
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To find Differential expressed exons using xps package
xps exons
updated 8.1 years ago by ★ 3.9k • written 8.1 years ago by ▴ 110
2
votes
6
replies
2.0k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga tcgabiolinks microarray exons oligonucleotide
updated 7.9 years ago by ▴ 270 • written 7.9 years ago by • 0
6
votes
4
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2.6k
views
the coordinates of exons of RefSeq or ENSEMBL genes
txdb genome exons
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 670
2
votes
4
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1.4k
views
Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
txdb txdb.hsapiens.ucsc.hg19.knowngene granges exons ucsc
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Increased number of total exons in DEXSeq
dexseq exons grch37
7.1 years ago aditi ▴ 20
2
votes
3
replies
900
views
Human Exon: arome.affymetrix residuals Inf value
exons exon array analysis
updated 5.5 years ago by 65k • written 5.5 years ago by • 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals UTRs exons CDS GenomicRanges
updated 6.7 years ago by ★ 11k • written 6.7 years ago by ▴ 110
0
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1
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2.0k
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Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate exons txdb.hsapiens.ucsc.hg19.knowngene
8.8 years ago adnan.niazi • 0
0
votes
1
reply
1.3k
views
Extract exon features from overlapping genes
GenomicFeatures exons
updated 8.9 years ago by 16k • written 8.9 years ago by • 0
0
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0
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657
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Filtering probesets for HuEx ST1.0 after probeset normalization
microarray exons probefiltering
5.4 years ago GENOMIC_region • 0
0
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0
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1.1k
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plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma diffSplice plotSplice exons annotation
8.7 years ago Jose M Garcia Manteiga ▴ 310
11 results • Page 1 of 1
Recent ...
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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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