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Showing :
exons
•
reset
3
votes
7
replies
1.5k
views
To find Differential expressed exons using xps package
xps
exons
updated 8.1 years ago by
cstrato
★ 3.9k • written 8.1 years ago by
Biologist
▴ 110
2
votes
6
replies
2.0k
views
Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga
tcgabiolinks
microarray
exons
oligonucleotide
updated 7.9 years ago by
Tiago C. Silva
▴ 270 • written 7.9 years ago by
Fernando
• 0
6
votes
4
replies
2.6k
views
the coordinates of exons of RefSeq or ENSEMBL genes
txdb
genome
exons
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
Bogdan
▴ 670
2
votes
4
replies
1.4k
views
Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
txdb
txdb.hsapiens.ucsc.hg19.knowngene
granges
exons
ucsc
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
olavur
▴ 10
0
votes
3
replies
1.2k
views
Increased number of total exons in DEXSeq
dexseq
exons
grch37
7.1 years ago
aditi
▴ 20
2
votes
3
replies
900
views
Human Exon: arome.affymetrix residuals Inf value
exons
exon array analysis
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
GENOMIC_region
• 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
rubi
▴ 110
0
votes
1
reply
2.0k
views
Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate
exons
txdb.hsapiens.ucsc.hg19.knowngene
8.8 years ago
adnan.niazi
• 0
0
votes
1
reply
1.3k
views
Extract exon features from overlapping genes
GenomicFeatures
exons
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
Emilie
• 0
0
votes
0
replies
657
views
Filtering probesets for HuEx ST1.0 after probeset normalization
microarray
exons
probefiltering
5.4 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.1k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma
diffSplice
plotSplice
exons
annotation
8.7 years ago
Jose M Garcia Manteiga
▴ 310
11 results • Page
1 of 1
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Replies
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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