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experimentdata
•
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0
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7
replies
608
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 1 day ago
shepherl
3.8k
1
vote
1
reply
693
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
Mohamed
▴ 30
0
votes
5
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.5 years ago • updated 2.0 years ago
shepherl
3.8k
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.4 years ago • updated 3.0 years ago
shepherl
3.8k
1
vote
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.5 years ago
shepherl
3.8k
0
votes
0
replies
766
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.2 years ago
shepherl
3.8k
0
votes
1
reply
845
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.3 years ago
shepherl
3.8k
0
votes
0
replies
871
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.4 years ago
shepherl
3.8k
0
votes
2
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
4.6 years ago • updated 4.4 years ago
shepherl
3.8k
0
votes
0
replies
844
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.6 years ago
shepherl
3.8k
0
votes
1
reply
1.0k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
4.7 years ago • updated 4.6 years ago
shepherl
3.8k
0
votes
3
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.9 years ago
shepherl
3.8k
0
votes
1
reply
858
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
5.0 years ago • updated 4.9 years ago
shepherl
3.8k
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.8k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
5.2 years ago
shepherl
3.8k
0
votes
0
replies
1.1k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
6.0 years ago
shepherl
3.8k
0
votes
0
replies
1.0k
views
How to load additional data from fcs files
fcs
concentration
experimentdata
7.0 years ago
jurg.spaak
• 0
0
votes
1
reply
1.5k
views
Extract the gate in the data file (fcs file) from MoFlo Astrios
gate
cytometry
experimentdata
stategy
MoFlo Astrios
7.2 years ago
cr
• 0
1
vote
2
replies
1.2k
views
Submitting an experimental data package
submit package
experimentdata
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
mark.dunning
• 0
1
vote
3
replies
1.5k
views
How to update the data in an experimental data package
experimentdata
update
updated 9.6 years ago by
Laurent Gatto
1.6k • written 9.6 years ago by
paul.theodor.pyl
▴ 10
0
votes
2
replies
3.0k
views
Biobase - Error: ExpressionSet
Microarray
Annotation
GO
ExperimentData
Biobase
Microarray
Annotation
GO
ExperimentData
updated 10.5 years ago by
Laurent Gatto
1.6k • written 10.5 years ago by
Lisa Cohen
▴ 50
0
votes
4
replies
9.2k
views
Error while building ExpressionSet from scratch....
ExperimentData
LMGene
ExperimentData
LMGene
updated 12.5 years ago by
Martin Morgan
25k • written 12.5 years ago by
Bas Jansen
▴ 150
0
votes
1
reply
1.4k
views
justRMA {affy} error
Annotation
ExperimentData
cdf
Annotation
ExperimentData
cdf
updated 12.7 years ago by
Martin Morgan
25k • written 12.7 years ago by
Julio Alejandro Di Rienzo
▴ 10
0
votes
2
replies
2.0k
views
RMA implemented in oligo package vs affy package
ExperimentData
cdf
affy
PROcess
oligo
ExperimentData
cdf
affy
PROcess
oligo
15.1 years ago
heyi xiao
▴ 360
0
votes
0
replies
1.3k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
beadarray
Annotation
ExperimentData
beadarray
15.1 years ago
Anne-Kristin Stavrum
▴ 10
0
votes
0
replies
1.3k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
Cancer
Biobase
beadarray
Annotation
ExperimentData
Cancer
15.1 years ago
Martin Morgan
25k
0
votes
3
replies
1.7k
views
ExpressionSet or MAList
Annotation
ExperimentData
Cancer
Annotation
ExperimentData
Cancer
updated 16.0 years ago by
Gordon Smyth
50k • written 16.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.6k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation
ExperimentData
cdf
affy
Annotation
ExperimentData
cdf
affy
updated 16.1 years ago by
James W. MacDonald
65k • written 16.1 years ago by
Langdon W B
▴ 20
0
votes
3
replies
2.1k
views
ReadAffy Error
Annotation
ExperimentData
cdf
affy
affyio
Annotation
ExperimentData
cdf
affy
affyio
updated 16.7 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 16.7 years ago by
Markus Schmidberger
▴ 380
0
votes
0
replies
1.7k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
16.7 years ago
Min Wook Kim
▴ 20
0
votes
6
replies
3.3k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 16.7 years ago by
Weiyin Zhou
▴ 220 • written 16.7 years ago by
Jenny Drnevich
★ 2.2k
31 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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▴ 40
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