Biostar Experimenthub

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ExperimentHub AnnotationHub SingleR

updated 23 months ago by shepherl 3.1k • written 23 months ago by enricoferrero ▴ 620

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DMRacte DMRcateranges ExperimentHub hg19.generanges

updated 18 months ago by friedmanhiccc ▴ 10 • written 22 months ago by richardallenfriedmanbrooklyn • 0

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software error curatedmetagenomicdata annotationhub experimenthub

updated 5.5 years ago by Levi Waldron 1.1k • written 5.5 years ago by morganx ▴ 10

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experimenthub

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by Tim Triche ★ 4.2k

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experimenthub continuous-integration

3.8 years ago • updated 3.7 years ago Kyle Johnsen ▴ 20

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experimenthub gse62944

updated 6.0 years ago by Valerie Obenchain ★ 6.7k • written 6.0 years ago by shinx558 • 0

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919

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annotationhub experimenthub

updated 5.8 years ago by Valerie Obenchain ★ 6.7k • written 5.8 years ago by Michael Love 37k

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907

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ExperimentHub curatedMetagenomicData

updated 5.6 years ago by Lucas Schiffer ▴ 240 • written 5.7 years ago by Wolfgang Huber 13k

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877

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experimenthub

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by Mike Smith ★ 5.6k

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806

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experimenthub annotationhub large dataset

4.1 years ago slinker ▴ 20

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733

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ExperimentHub

5.7 years ago francois.collin • 0

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414

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BiocFileCache AnnotationHub ExperimentHub cache

15 months ago shepherl 3.1k

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409

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experimenthub

updated 3.8 years ago by shepherl 3.1k • written 3.8 years ago by Kyle Johnsen ▴ 20

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329

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ExperimentHub

updated 3.2 years ago by shepherl 3.1k • written 3.2 years ago by story.benjamin ▴ 10

14 results • Page 1 of 1

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Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Standard rules of subsetting in R apply. If the genes are rownames then do `res_aga[my_genes,]`, like you would subset any data.frame/matri…

Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by James W. MacDonald 60k

I assume the politics have to do with the site-wide version of R? In over 20 years of using R, I have very rarely relied on an installation…

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Answer: setting sizeFactors from scran :: caculateSumFactors.

Answer: ComplexHeatmap: Change font size of annotation axis values

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

A: svaseq: how many and which surrogate variables to pick

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Scholar to jaro.slamecka ▴ 130

Scholar to James W. MacDonald 60k

Teacher to Gordon Smyth 45k