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experimenthub
•
reset
6
votes
12
replies
4.7k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 2 days ago
shepherl
3.8k
0
votes
4
replies
199
views
Storing directories inside an ExperimentHub package?
ExperimentHub
14 days ago • updated 13 days ago
Tim Barry
• 0
0
votes
4
replies
1.3k
views
Cannot connect to ExperimentHub server
ExperimentHub
4 months ago
yanling
• 0
0
votes
1
reply
716
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 13 months ago by
Peter Hickey
▴ 740 • written 13 months ago by
cathalgking
▴ 10
0
votes
3
replies
683
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
21 months ago • updated 20 months ago
sandmann.t
▴ 70
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago • updated 3.0 years ago
shepherl
3.8k
8
votes
33
replies
3.6k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 3.3 years ago by
friedmanhiccc
▴ 10 • written 3.6 years ago by
richardallenfriedmanbrooklyn
▴ 20
8
votes
16
replies
6.2k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 3.7 years ago by
shepherl
3.8k • written 3.7 years ago by
enricoferrero
▴ 660
2
votes
2
replies
686
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 5.0 years ago by
shepherl
3.8k • written 5.0 years ago by
story.benjamin
▴ 20
4
votes
10
replies
1.8k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
5.6 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
723
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 5.6 years ago by
shepherl
3.8k • written 5.7 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
2.2k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
1.4k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
5.9 years ago
slinker
▴ 20
5
votes
2
replies
1.7k
views
Setting ExperimentHub Cache Location
experimenthub
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Mike Smith
★ 6.5k
5
votes
11
replies
2.5k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.3 years ago by
Levi Waldron
★ 1.1k • written 7.4 years ago by
morganx
▴ 10
5
votes
3
replies
1.4k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 7.4 years ago by
Lucas Schiffer
▴ 240 • written 7.5 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.1k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
7.5 years ago
francois.collin
• 0
4
votes
7
replies
1.6k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Michael Love
41k
0
votes
2
replies
1.4k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
shinx558
• 0
19 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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