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experimenthub
•
reset
6
votes
12
replies
4.6k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 1 day ago
shepherl
3.8k
0
votes
4
replies
196
views
Storing directories inside an ExperimentHub package?
ExperimentHub
13 days ago • updated 12 days ago
Tim Barry
• 0
0
votes
4
replies
1.3k
views
Cannot connect to ExperimentHub server
ExperimentHub
4 months ago
yanling
• 0
0
votes
1
reply
715
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 13 months ago by
Peter Hickey
▴ 740 • written 13 months ago by
cathalgking
▴ 10
0
votes
3
replies
683
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
21 months ago • updated 20 months ago
sandmann.t
▴ 70
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago • updated 3.0 years ago
shepherl
3.8k
8
votes
33
replies
3.6k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 3.3 years ago by
friedmanhiccc
▴ 10 • written 3.6 years ago by
richardallenfriedmanbrooklyn
▴ 20
8
votes
16
replies
6.2k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 3.7 years ago by
shepherl
3.8k • written 3.7 years ago by
enricoferrero
▴ 660
2
votes
2
replies
686
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 5.0 years ago by
shepherl
3.8k • written 5.0 years ago by
story.benjamin
▴ 20
4
votes
10
replies
1.8k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
5.6 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
723
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 5.6 years ago by
shepherl
3.8k • written 5.6 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
2.2k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
1.3k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
5.9 years ago
slinker
▴ 20
5
votes
2
replies
1.7k
views
Setting ExperimentHub Cache Location
experimenthub
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Mike Smith
★ 6.5k
5
votes
11
replies
2.5k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.3 years ago by
Levi Waldron
★ 1.1k • written 7.3 years ago by
morganx
▴ 10
5
votes
3
replies
1.4k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 7.4 years ago by
Lucas Schiffer
▴ 240 • written 7.5 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.1k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
7.5 years ago
francois.collin
• 0
4
votes
7
replies
1.6k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Michael Love
41k
0
votes
2
replies
1.4k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
shinx558
• 0
19 results • Page
1 of 1
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Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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