Bioconductor Expression

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3.2k

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rpkm scater calcaverage R expression

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by kushshah ▴ 10

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1.8k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by Paulo Nuin ▴ 200

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1.8k

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expression R filtering limma

19 months ago • updated 16 months ago mohammedtoufiq91 ▴ 10

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1.1k

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GEO expression GEOquery

updated 4.0 years ago by Robert Castelo ★ 3.2k • written 4.0 years ago by lsbew • 0

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689

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deseq2 genes expression

updated 5.0 years ago by Michael Love 41k • written 5.0 years ago by UserAnonyme • 0

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1.9k

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RATs RNA-Seq Isoforms DTU expression

updated 4.8 years ago by fruce_ki ▴ 20 • written 4.8 years ago by UserAnonyme • 0

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1.3k

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variance formula expression

updated 5.2 years ago by mikhael.manurung ▴ 270 • written 5.2 years ago by rina ▴ 30

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438

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expression variancePartition edgeR

20 months ago Jonathan • 0

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1.1k

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microarray quantile expression R Normalization

updated 2.8 years ago by Konstantinos Yeles ▴ 80 • written 2.8 years ago by mohammedtoufiq91 ▴ 10

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1.6k

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job sequencing methylation expression Job

9.2 years ago Andy Lynch ▴ 120

10 results • Page 1 of 1

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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia) by christianhilton64 • 0

I'm less familiar with the specifics of GSVA, but I'm curious about the overall goal of this analysis. Could you provide a high-level summa…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k