Showing : expressionset • reset
6
votes
7
replies
4.8k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
10.3 years ago martin.hoelzer ▴ 20
3
votes
9
replies
2.6k
views
How many features an ExpressionSet can contain ?
ExpressionSet
3.6 years ago OE • 0
5
votes
7
replies
2.3k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 20
5
votes
2
replies
1.4k
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 20
2
votes
5
replies
6.6k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
10.2 years ago thrabe • 0
3
votes
10
replies
3.3k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
10.9 years ago svlachavas ▴ 840
1
vote
3
replies
2.8k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 9.3 years ago by ▴ 840 • written 9.3 years ago by • 0
0
votes
6
replies
2.3k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 8.7 years ago by • 0 • written 9.0 years ago by ▴ 10
3
votes
5
replies
2.2k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 9.4 years ago by ▴ 70 • written 9.4 years ago by • 0
1
vote
2
replies
3.9k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 9.3 years ago by 25k • written 9.3 years ago by ★ 4.1k
0
votes
1
reply
1.3k
views
beadarray error conversion
beadarray limma ExpressionSet
updated 9.2 years ago by 53k • written 9.2 years ago by • 0
0
votes
1
reply
1.6k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 9.0 years ago by ▴ 840 • written 9.0 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 60
4
votes
3
replies
1.7k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
1
vote
10
replies
3.0k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 8.3 years ago by 25k • written 8.4 years ago by • 0
1
vote
2
replies
827
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
22 months ago Mj.A. ▴ 20
2
votes
1
reply
3.7k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 10.5 years ago by ★ 29k • written 10.5 years ago by ▴ 30
2
votes
4
replies
2.4k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 10.0 years ago by 25k • written 10.0 years ago by ▴ 840
1
vote
2
replies
2.0k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
1
vote
1
reply
1.5k
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
9.8 years ago g_draculla ▴ 10
0
votes
3
replies
3.2k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
9.7 years ago NS ▴ 60
0
votes
1
reply
1.3k
views
ExpressionSet: Internal Standard
expressionset
updated 9.7 years ago by ★ 13k • written 9.7 years ago by • 0
1
vote
1
reply
1.5k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 70
3
votes
2
replies
3.2k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 6.3 years ago by 68k • written 6.3 years ago by ▴ 20
0
votes
1
reply
941
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
5.8 years ago aush ▴ 40
4
votes
8
replies
3.7k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 5.8 years ago by 53k • written 5.8 years ago by • 0
0
votes
1
reply
1.2k
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
8
votes
23
replies
6.6k
views
Convert Seurat Object to Summarised Experiment or ExpressionSet
SummarizedExperiment ExpressionSet
updated 22 months ago by ★ 3.4k • written 22 months ago by ▴ 50
0
votes
3
replies
3.4k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
0
votes
2
replies
1.5k
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
6.4 years ago rezashiralmohammad • 0
0
votes
0
replies
1.4k
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
7.9 years ago rf • 0
0
votes
0
replies
1.2k
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
7.5 years ago jirkanov • 0
0
votes
0
replies
1.0k
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
7.4 years ago payam_delfani1980 • 0
3
votes
3
replies
2.4k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
9.1 years ago gabor.halasz • 0
0
votes
1
reply
1.8k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
9.0 years ago andreas.pittroff • 0
0
votes
0
replies
1.8k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
9.5 years ago Steffen Neumann ▴ 30
36 results • Page 1 of 1
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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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