Showing : expressionset • reset
8
votes
23
replies
689
views
Convert Seurat Object to Summarised Experiment or ExpressionSet
SummarizedExperiment ExpressionSet
updated 5 days ago by ★ 3.2k • written 6 days ago by ▴ 40
1
vote
10
replies
1.8k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
3
votes
10
replies
2.3k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
9.1 years ago svlachavas ▴ 830
3
votes
9
replies
1.4k
views
How many features an ExpressionSet can contain ?
ExpressionSet
22 months ago OE • 0
4
votes
8
replies
2.2k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 4.0 years ago by 50k • written 4.0 years ago by • 0
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 20
6
votes
7
replies
3.7k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
8.5 years ago martin.hoelzer ▴ 20
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 6.9 years ago by • 0 • written 7.2 years ago by ▴ 10
2
votes
5
replies
3.8k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
8.4 years ago thrabe • 0
3
votes
5
replies
1.5k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 7.5 years ago by ▴ 70 • written 7.5 years ago by • 0
2
votes
4
replies
1.9k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 830
0
votes
3
replies
2.5k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
7.9 years ago NS ▴ 60
4
votes
3
replies
1.1k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 6.8 years ago by 65k • written 6.8 years ago by • 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
7.3 years ago gabor.halasz • 0
0
votes
3
replies
2.1k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 21 months ago by 65k • written 21 months ago by • 0
1
vote
3
replies
2.2k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 7.5 years ago by ▴ 830 • written 7.5 years ago by • 0
1
vote
2
replies
207
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
21 days ago Mj.A. • 0
1
vote
2
replies
1.4k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 8.1 years ago by 65k • written 8.1 years ago by • 0
1
vote
2
replies
3.0k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 7.5 years ago by 25k • written 7.5 years ago by ★ 3.9k
0
votes
2
replies
981
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
4.6 years ago rezashiralmohammad • 0
3
votes
2
replies
2.2k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 20
5
votes
2
replies
838
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 3.6 years ago by 25k • written 3.6 years ago by ▴ 20
0
votes
1
reply
911
views
beadarray error conversion
beadarray limma ExpressionSet
updated 7.3 years ago by 50k • written 7.3 years ago by • 0
1
vote
1
reply
1.0k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 70
0
votes
1
reply
1.2k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 7.2 years ago by ▴ 830 • written 7.2 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 6.9 years ago by 65k • written 6.9 years ago by ▴ 60
0
votes
1
reply
1.3k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
7.2 years ago andreas.pittroff • 0
0
votes
1
reply
959
views
ExpressionSet: Internal Standard
expressionset
updated 7.9 years ago by ★ 13k • written 7.9 years ago by • 0
1
vote
1
reply
1.0k
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
8.0 years ago g_draculla ▴ 10
0
votes
1
reply
497
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
4.0 years ago aush ▴ 40
2
votes
1
reply
3.1k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 30
0
votes
1
reply
675
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
0
votes
0
replies
955
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
6.1 years ago rf • 0
0
votes
0
replies
846
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.7 years ago jirkanov • 0
0
votes
0
replies
722
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
5.6 years ago payam_delfani1980 • 0
0
votes
0
replies
1.3k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
7.7 years ago Steffen Neumann ▴ 30
36 results • Page 1 of 1
Recent ...
Replies
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30
Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
United States, 2 minutes ago
France, 3 minutes ago
European Union, 6 minutes ago
United States, 15 minutes ago
France, 16 minutes ago
Traffic: 760 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6