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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 14.9 years ago by James W. MacDonald 65k • written 14.9 years ago by Paolo Innocenti ▴ 320

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2.7k

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 15.0 years ago by Paolo Innocenti ▴ 320 • written 15.0 years ago by Gordon Smyth 50k

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multtest limma factDesign multtest limma factDesign

updated 20.0 years ago by Kasper Daniel Hansen ▴ 630 • written 20.0 years ago by Jordi Altirriba Gutiérrez ▴ 350

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Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign

15.9 years ago Glazko, Galina ▴ 350

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1.3k

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multtest limma factDesign multtest limma factDesign

updated 20.0 years ago by Jordi Altirriba Gutiérrez ▴ 350 • written 20.0 years ago by Denise Scholtens ▴ 40

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1.2k

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factDesign factDesign

updated 14.9 years ago by rgentleman ★ 5.5k • written 14.9 years ago by Alberto Goldoni ▴ 420

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Microarray genefilter affy factDesign Microarray genefilter affy factDesign

updated 14.9 years ago by Denise Scholtens ▴ 70 • written 14.9 years ago by De-Jian ZHAO ▴ 240

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1.1k

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

15.0 years ago Paolo Innocenti ▴ 320

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988

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factDesign factDesign

updated 14.9 years ago by Richard Pearson ▴ 160 • written 14.9 years ago by Alberto Goldoni ▴ 420

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914

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limma factDesign limma factDesign

20.0 years ago Jordi Altirriba Gutiérrez ▴ 350

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890

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factDesign factDesign

updated 19.8 years ago by Jeff Lande ▴ 110 • written 19.8 years ago by Denise Scholtens ▴ 70

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863

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Microarray multtest gcrma factDesign PROcess Microarray multtest gcrma factDesign PROcess

19.8 years ago Jeff Lande ▴ 110

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841

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GO limma factDesign GO limma factDesign

20.1 years ago Gordon Smyth 50k

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814

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factDesign factDesign

updated 20.0 years ago by Denise Scholtens ▴ 40 • written 20.0 years ago by Claire Wilson ▴ 280

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810

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factDesign factDesign

14.9 years ago Alberto Goldoni ▴ 420

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791

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factDesign factDesign

updated 20.0 years ago by Denise Scholtens ▴ 40 • written 20.0 years ago by Claire Wilson ▴ 280

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781

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Microarray Cancer multtest affy limma siggenes factDesign Microarray Cancer multtest

20.0 years ago James W. MacDonald 65k

17 results • Page 1 of 1

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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k

Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k