Bioconductor FastMNN

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1.0k

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scanpy scRNAseq fastmnn r

18 months ago Madiha • 0

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1.1k

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batchelor fastMNN scRNAseq

20 months ago Guandong Shang ▴ 40

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2.0k

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scater batchelor scRNAseq fastMNN

updated 20 months ago by Aaron Lun ★ 28k • written 20 months ago by Guandong Shang ▴ 40

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944

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fastmnn batchelor BatchEffect

2.6 years ago p.joshi ▴ 40

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1.1k

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fastmnn scater batchelor

updated 3.8 years ago by Aaron Lun ★ 28k • written 3.8 years ago by ATpoint ★ 4.0k

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554

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fastMNN Interpretation

3.9 years ago mloza ▴ 10

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1.3k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by sorjuelal • 0

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991

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.7 years ago by rmf ▴ 20

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1.4k

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SCRAN fastMNN mnnCorrect

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by tobi • 0

9 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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