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fasta
•
reset
0
votes
0
replies
629
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.5 years ago
HELEN
• 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.7 years ago
HELEN
• 0
1
vote
0
replies
817
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
2.7 years ago
Endre Sebestyén
▴ 70
0
votes
1
reply
684
views
How to get similarity score between two genomes of different species
fasta
multi-species
3.6 years ago
drew.neely
• 0
0
votes
0
replies
687
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
3.6 years ago
dh.heredero
▴ 10
0
votes
2
replies
878
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 3.9 years ago by
joannew
• 0
6
votes
8
replies
2.7k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.3k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 5.2 years ago by
Michael Lawrence
★ 11k • written 5.2 years ago by
k.vitting.seerup
▴ 120
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
christinafragel
• 0
0
votes
0
replies
872
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
5.4 years ago
A
▴ 40
0
votes
16
replies
4.3k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
5.5 years ago
writetoroopali
• 0
0
votes
0
replies
1.4k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.0k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
6.5 years ago
achaillon
• 0
2
votes
3
replies
2.1k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
Glubbdrubb
• 0
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
3.0k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
kevin.debray
• 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 6.9 years ago by
tongtong.wang1210
• 0 • written 7.3 years ago by
Olorin
▴ 50
1
vote
2
replies
2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
fastabest
• 0
0
votes
5
replies
1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.0 years ago by
Jeff Johnston
▴ 90 • written 8.0 years ago by
TimothéeFlutre
▴ 80
0
votes
4
replies
2.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.1 years ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 8.3 years ago by
Hervé Pagès
16k • written 8.5 years ago by
giuliobarth
• 0
2
votes
0
replies
3.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.7 years ago
Sonali Arora
▴ 390
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr
fasta
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Angel
▴ 40
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.8 years ago by
xiaojing.wang
▴ 50 • written 8.8 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.4 years ago
b.stielow
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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