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Comment: mas5calls function doesn't work; mirna40cdf problem
by
Guido Hooiveld
★
3.5k
Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…
Comment: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
•
0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
•
0
Hi Michael,
So I use this
res_LRT <- results(dds_lrt)
r2=lfcShrink(dds_lrt, coef=7, res=res_LRT)
tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
•
0
I used the combat-seq but the deseq complain as its not integer what should i do
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