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Comment: Uniform window size for different genes by rbenel ▴ 20
I tried some workaround, displaying the same gene on both tracks and playing with the `heights` but I still can't get the gene model to be …
Comment: Limma prametrization by Giovanni • 0
Thank you!
Answer: Gviz DataTrack data transformation on the fly by Robert Ivanek ▴ 710
Hi Robert, There was before only implementation of `mean` in aggregation for `window=-1`. This is now fixed in release (1.38.2) and dev…
Comment: Uniform window size for different genes by rbenel ▴ 20
Hi James, Thanks for the response! I found the chunk you are referring to, which would allow multiple tracks to be plotted and the height…
Comment: Unable to GetGRangesFromEnsDb by Francesco Monticolo • 0
Dear James, thank you very much, I upgraded to R-4.1.2 and Bioc-3.14 and I solved the issue. Best wishes Francesco
Votes
Answer: Limma prametrization
Comment: Limma prametrization
A: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
Answer: Unable to GetGRangesFromEnsDb
Comment: deseq2 + filtering low counts with noiseq function
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