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Comment: Compare and filter three BAM files by wt215 • 0
Thank you, actually, there are two species. The 3rd genome is the combination of them (1st: h. 2nd: m and 3rd: hm). I want to make sure tha…
Comment: DispEsts plot by Sep • 0
I think it is across. My design matrix is like the following: ![enter image description here][1] [1]: /media/images/aec83c83-23ce-4e9f…
Comment: Batch correction and Deseq2 by suphamon.j • 0
Hi, thank you very much for your answer. As I have seen some articles about normalization, I have a confusion a little bit about the diff…
Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData by helucro ▴ 50
Not familiar with the package, but why the `…$Treament` in the formula when the it’s `key_IP_mf.Treatment`?
Comment: Time-course, comparison of two groups by Gordon Smyth 47k
My suggestion was not to use splines, in which case it's all pretty easy. Splines don't offer any essential gains for your replicated exper…
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A: Compare and filter two BAM files, one record at a time
Answer: Batch correction and Deseq2
Answer: How edgeR estimate the common dispersion?
Comment: RUVr batch correction doubling number of DEGs
Comment: RUVr batch correction doubling number of DEGs
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