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Answer: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k
You have a `data.frame` with 9 columns and are specifying a minimum of 20 observations per gene. Since you don't have 20 observations for a…
Comment: Annotation for EPICv2 by nurkenber • 0
Got it Thank you
Comment: Annotation for EPICv2 by James W. MacDonald 67k
I don't think I can help with your questions. Like I said, the annotation data are based on the manifest files that Illumina provides, and …
Comment: Annotation for EPICv2 by nurkenber • 0
Thank you for your reply. I welcome any help I can get) I checked the first two are based on the same file, [Infinium MethylationEPIC v2.…
Answer: Mostly increased counts in differentially accessible peaks using DESeq2 by Michael Love 42k
The difference between tracks and DESeq2 (or any count method in Bioc) is that tracks use simple scaling that is not robust to large shifts…
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Comment: Annotation for EPICv2
Answer: Highly DE genes but small count difference within conditions
Answer: Highly DE genes but small count difference within conditions
Answer: Annotation for EPICv2
C: Vertical line at A=0, nothing else, on MA plot
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