Bioconductor FeatureCounts

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822

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featureCounts DESeq2

updated 21 days ago by James W. MacDonald 67k • written 22 days ago by Bioinformagician • 0

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542

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featureCounts Subread Bioconductor

7 weeks ago • updated 4 weeks ago Jessica • 0

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379

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featureCounts Rsubread

5 weeks ago Anke • 0

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407

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Bioconductor featurecounts subread

3 months ago • updated 12 weeks ago Rachael • 0

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792

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featureCounts Rsubread

5 months ago • updated 12 weeks ago isaac.vock • 0

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290

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FeatureCounts Rsubread

6 months ago chris2.a.white • 0

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503

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featureCounts Rsubread

updated 6 months ago by Wei Shi ★ 3.6k • written 7 months ago by Alex • 0

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6.7k

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rsubread featurecounts

updated 7 months ago by Gordon Smyth 51k • written 9.5 years ago by Ryan C. Thompson ★ 7.9k

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692

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featureCounts Rsubread

updated 7 months ago by Gordon Smyth 51k • written 7 months ago by tjgray4 • 0

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968

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featurecounts Rsubread

7 months ago isaac.vock • 0

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3.9k

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RNA-seq featureCounts ht-seq

written 4.1 years ago by ag1805x ▴ 80

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1.7k

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rsubread featurecounts summarizeoverlaps

updated 5 months ago by isaac.vock • 0 • written 8.2 years ago by Jon Manning ▴ 90

12 results • Page 1 of 1

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Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS by semra • 0

``` >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4") 'getOption("repos")' replaces Bioconductor standar…

Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

I will say it is possible but a bit cumbersome to perform an LRT for 60 vs 0. You would have to re-run `DESeq()` or minimally `nbinomLRT` w…

Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

Correct: https://www.bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#i-ran-a-likelihood-ratio-test-but-results…

Comment: concentration tables suitable as input for new packages? by katja.danielzik • 0

Thank you for your reply! "Spectra" indeed is another example for software processing MS-data to p.e. concentration tables. My package howe…

Comment: AffylmGUI does not start wit R 4.4.1 by richardallenfriedmanbrooklyn ▴ 20

Gordon, Thank you as always. I have tried the instructions you gave before my most recent post. The patch is almost certainly beyond my ca…

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C: [DESeq2] time series strain-specific differences over time

Comment: [DESeq2] time series strain-specific differences over time

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