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featurecount
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0
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256
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Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
6 months ago
kthapa
• 0
0
votes
2
replies
989
views
output file conversion from FeatureCount to DESeq2 - no duplicate for samples
DESeq2
FeatureCount
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
Jiayi
• 0
0
votes
1
reply
641
views
quantifying exom reads featureCount
ExomeSeq
featureCount
2.4 years ago
adR
▴ 30
4
votes
4
replies
1.5k
views
Issues loading a BAM file resulted from featurecounts
featurecount
rsubread
GenomicAlignments
4.0 years ago
Konstantinos Yeles
▴ 80
2
votes
6
replies
2.5k
views
featureCount error - cannot identify gene_id
dexseq
rsubread
featureCount
software error
updated 4.3 years ago by
Yang Liao
▴ 380 • written 4.3 years ago by
seung.ho.steven.choi
• 0
2
votes
1
reply
1.7k
views
How to change stringtie gene_id names with ref_gene_id when performing featureCount
featureCount
rna-seq
gene_id
re_gene_id
stringtie
updated 5.2 years ago by
Wei Shi
★ 3.6k • written 5.2 years ago by
IRAIA.MAIALEN
• 0
6 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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