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featurecount
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0
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255
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Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
6 months ago
kthapa
• 0
0
votes
2
replies
988
views
output file conversion from FeatureCount to DESeq2 - no duplicate for samples
DESeq2
FeatureCount
updated 19 months ago by
ATpoint
★ 4.0k • written 19 months ago by
Jiayi
• 0
0
votes
1
reply
640
views
quantifying exom reads featureCount
ExomeSeq
featureCount
2.4 years ago
adR
▴ 30
4
votes
4
replies
1.5k
views
Issues loading a BAM file resulted from featurecounts
featurecount
rsubread
GenomicAlignments
4.0 years ago
Konstantinos Yeles
▴ 80
2
votes
6
replies
2.5k
views
featureCount error - cannot identify gene_id
dexseq
rsubread
featureCount
software error
updated 4.3 years ago by
Yang Liao
▴ 380 • written 4.3 years ago by
seung.ho.steven.choi
• 0
2
votes
1
reply
1.7k
views
How to change stringtie gene_id names with ref_gene_id when performing featureCount
featureCount
rna-seq
gene_id
re_gene_id
stringtie
updated 5.2 years ago by
Wei Shi
★ 3.6k • written 5.2 years ago by
IRAIA.MAIALEN
• 0
6 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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