Showing : featurecounts • reset
0
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186
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Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
updated 7 days ago by ★ 3.6k • written 15 days ago by • 0
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0
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120
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Feature Counts -R XS Read Assignment Tag
FeatureCounts Rsubread
6 weeks ago chris2.a.white • 0
1
vote
1
reply
233
views
featureCounts unable to assign long reads to one specific isoform
featureCounts Rsubread
updated 6 weeks ago by ★ 3.6k • written 9 weeks ago by • 0
7
votes
28
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6.1k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread featurecounts
updated 10 weeks ago by 50k • written 9.1 years ago by ★ 7.9k
0
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4
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401
views
Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts Rsubread
updated 10 weeks ago by 50k • written 11 weeks ago by • 0
4
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6
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717
views
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts Rsubread
11 weeks ago • updated 10 weeks ago isaac.vock • 0
0
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2
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3.4k
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Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 3.7 years ago by ▴ 80
0
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0
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897
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Tutorial: Read data file containing both counts and annotation into edgeR
rpkm edgeR featureCounts
7 months ago Gordon Smyth 50k
0
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2
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975
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData Rsubread mapping featurecounts
updated 8 months ago by 65k • written 8 months ago by • 0
1
vote
1
reply
638
views
featureCounts bug with unpaired reads
Rsubread featureCounts
updated 9 months ago by ▴ 380 • written 9 months ago by • 0
0
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1
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837
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Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 11 months ago by ★ 3.6k • written 11 months ago by • 0
1
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5
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4.6k
views
featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
subread featureCounts
updated 8 months ago by ▴ 380 • written 2.8 years ago by ▴ 10
0
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5
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2.2k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts SAM htseqcounts
updated 9 months ago by ▴ 380 • written 6.9 years ago by • 0
2
votes
2
replies
1.6k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps
updated 15 days ago by • 0 • written 7.8 years ago by ▴ 90
3
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16
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17k
views
featureCounts - paired-end data
featurecounts rsubread
updated 10 months ago by • 0 • written 8.9 years ago by ▴ 140
15 results • Page 1 of 1
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Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks again for your answer, I will try to play a little bit with the parameters. Only one thing, my data are actually CpG methylation :)…
Comment: flowStats Search Error by tholmes • 0
Thank you so much!
Comment: what is the sampleFiles by James W. MacDonald 65k
I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.
Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k
Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…
Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0
Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…
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Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
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