Showing : fgsea • reset
1
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5
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fgsea fork
fgsea
updated 19 days ago by 65k • written 20 days ago by • 0
0
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2
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302
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The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
27 days ago • updated 15 days ago Gordon • 0
0
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5
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429
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Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 9 weeks ago by 65k • written 10 weeks ago by • 0
3
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2
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370
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cant' download fgsea_1.20.0.tar.gz
download fgsea
8 months ago luca.s ▴ 50
0
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0
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589
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using fgsea to compare two datasets
GSEA fgsea
9 months ago Cen • 0
0
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0
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802
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff clusterProfiler fgsea
10 months ago pg45863 ▴ 10
7
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6
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2.1k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler GSEA fgsea
updated 15 months ago by 50k • written 16 months ago by ▴ 30
0
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0
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357
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is it possible to limit fgsea to particular tissue type?
fgsea
17 months ago kavator ▴ 30
0
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4
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1.1k
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GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
18 months ago dario.beraldi • 0
0
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7
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1.8k
views
Problem with fgsea
fgsea
updated 2.1 years ago by ▴ 240 • written 2.1 years ago by • 0
2
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3
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2.9k
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fgsea not downloading due to new r version. Is there a way around this?
r fgsea
2.2 years ago amir.khan • 0
0
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1
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2.3k
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Tied Ranks in fgsea
fgsea
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
2
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3
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1.7k
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Compute fgsea with my own database with R version 4.0.2
R fgsea
updated 3.0 years ago by ▴ 240 • written 3.0 years ago by • 0
3
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3
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4.0k
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Warning with the example of GSEA
fgsea fgse
3.0 years ago julie.hardy • 0
2
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2
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2.2k
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fgsea usage question - what gene set to use?
fgsea
3.1 years ago alexandr.gopanenko ▴ 50
0
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2
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1.6k
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Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.1 years ago by ★ 3.9k • written 3.1 years ago by ▴ 20
0
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3
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2.1k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea DESeq2
updated 3.2 years ago by ★ 4.0k • written 3.2 years ago by ▴ 30
0
votes
1
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1.0k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 3.8 years ago by ▴ 240 • written 3.8 years ago by ▴ 30
1
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2
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1.5k
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what does gseaparam argument in fgsea() means?
fgsea
updated 3.8 years ago by ▴ 240 • written 3.8 years ago by ▴ 30
3
votes
2
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1.4k
views
Calculate S/N ratios from apeglm for GSEA
apeglm fgsea Signal-To-Noise Ratio
updated 4.9 years ago by 41k • written 4.9 years ago by ▴ 20
8
votes
5
replies
3.4k
views
How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 5.0 years ago by 50k • written 5.0 years ago by ▴ 110
0
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3
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2.8k
views
fgsea p-values are mostly the same upon analysis
fgsea gsea sc-rnaseq
5.8 years ago atakanekiz ▴ 30
1
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2
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1.8k
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ReactomePA / Reactome: GSEA error message
reactomepa reactome gsea fgsea
5.8 years ago martin.busch • 0
1
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5
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2.0k
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FGSEA only runs with <1000 permutations
fgsea gsea
updated 6.7 years ago by ▴ 240 • written 6.7 years ago by • 0
0
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8
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2.7k
views
Does fgsea order the stats argument?
fgsea
6.8 years ago rubi ▴ 110
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db fgsea
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 240
2
votes
1
reply
1.5k
views
Direction aware fgsea test
fgsea gsea
updated 7.3 years ago by ▴ 240 • written 7.3 years ago by ▴ 110
27 results • Page 1 of 1
Recent ...
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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation by Michael Love 41k
It is dependent on the other samples in the dataset.
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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