Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
fgsea
•
reset
0
votes
4
replies
131
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
6 days ago
sropri
• 0
1
vote
5
replies
298
views
fgsea fork
fgsea
updated 26 days ago by
James W. MacDonald
65k • written 26 days ago by
yimjohns
• 0
0
votes
2
replies
323
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
4 weeks ago • updated 22 days ago
Gordon
• 0
0
votes
5
replies
448
views
Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 10 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
Gordon
• 0
3
votes
2
replies
375
views
cant' download fgsea_1.20.0.tar.gz
download
fgsea
8 months ago
luca.s
▴ 50
0
votes
0
replies
595
views
using fgsea to compare two datasets
GSEA
fgsea
9 months ago
Cen
• 0
0
votes
0
replies
815
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
7 results • Page
1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
Awards
• All
Teacher
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Popular Question
to
Bine
▴ 40
Scholar
to
ATpoint
★ 4.0k
Locations
• All
Japan,
just now
San Diego,
2 minutes ago
United States,
17 minutes ago
France,
18 minutes ago
WEHI, Melbourne, Australia,
41 minutes ago
Traffic: 693 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6