Bioconductor Filter

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649

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filter deseq2

updated 11 months ago by Michael Love 41k • written 12 months ago by PD • 0

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859

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R filter limma Normalization Microarray

12 months ago Abdul ▴ 20

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535

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filter gate_quad_tmix gt_gating

2.1 years ago • updated 23 months ago Pierre • 0

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676

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flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

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1.3k

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RNA WGCNA filter

4.8 years ago modarzi ▴ 10

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758

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filter deseq2

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by charles.foster ▴ 160

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1.1k

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rtracklayer gff filter

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by alslonik • 0

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1.8k

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deseq2 filter genefilter

updated 6.4 years ago by Michael Love 41k • written 6.5 years ago by Björn • 0

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3.7k

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loop filter

written 6.4 years ago by kritikamish99 ▴ 10

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3.1k

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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1.3k

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limma filter genelist differential gene expression

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by bi_Scholar • 0

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1.0k

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missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

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1.3k

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flowcore gate subsetting filter

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by peterfoster ▴ 20

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2.6k

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probe filter subset gene symbol affy

9.1 years ago alakatos ▴ 130

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3.5k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

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3.1k

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deseq filter reads

9.3 years ago ccheung • 0

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1.3k

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variantannotation vcf fixed filter

9.3 years ago Anna N. • 0

17 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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