Bioconductor Filter

Showing : filter • reset

votes

replies

3.5k

views

bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

vote

replies

3.7k

views

loop filter

written 6.4 years ago by kritikamish99 ▴ 10

votes

replies

3.2k

views

DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

votes

replies

2.6k

views

probe filter subset gene symbol affy

9.1 years ago alakatos ▴ 130

votes

replies

658

views

filter deseq2

updated 12 months ago by Michael Love 41k • written 12 months ago by PD • 0

votes

replies

1.3k

views

variantannotation vcf fixed filter

9.3 years ago Anna N. • 0

votes

replies

3.1k

views

deseq filter reads

9.3 years ago ccheung • 0

votes

replies

1.3k

views

limma filter genelist differential gene expression

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by bi_Scholar • 0

vote

replies

869

views

R filter limma Normalization Microarray

12 months ago Abdul ▴ 20

vote

1.0k

views

missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

votes

1.1k

views

rtracklayer gff filter

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by alslonik • 0

vote

761

views

filter deseq2

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by charles.foster ▴ 160

vote

1.3k

views

RNA WGCNA filter

4.8 years ago modarzi ▴ 10

votes

682

views

flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

votes

1.3k

views

flowcore gate subsetting filter

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by peterfoster ▴ 20

votes

538

views

filter gate_quad_tmix gt_gating

2.1 years ago • updated 24 months ago Pierre • 0

votes

1.8k

views

deseq2 filter genefilter

updated 6.4 years ago by Michael Love 41k • written 6.5 years ago by Björn • 0

17 results • Page 1 of 1

Recent ...

Replies

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Votes

Answer: Gene set analysis: GSVA, Z-Score, and fold-changes

Answer: FilterByExpr low counts with small sample size

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Awards • All