Bioconductor Filtering

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DEG Limma Filtering

updated 8.1 years ago by Ryan C. Thompson ★ 7.9k • written 8.1 years ago by Shamim Sarhadi ▴ 20

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r edger differential gene expression filtering bioconductor

updated 6.0 years ago by Gordon Smyth 50k • written 6.0 years ago by Biologist ▴ 110

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9.3k

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rnaseq edger filtering

updated 7.8 years ago by David ROUX ▴ 20 • written 7.9 years ago by alireza_sharifian_10 ▴ 10

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filtering STD DEG limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by alexia.brunel • 0

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filtering bioconductor genesymbols expressionset

9.1 years ago svlachavas ▴ 830

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expression R filtering limma

19 months ago • updated 16 months ago mohammedtoufiq91 ▴ 10

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edger R filtering

6.0 years ago camerond • 0

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edger filtering

9.1 years ago cpcantalapiedra • 0

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filtering RNA-Seq CPM edgeR filterByExpr

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by mohammedtoufiq91 ▴ 10

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microarray affymetrix microarrays pre-filtering filtering nonspecific filtering

updated 6.9 years ago by Wolfgang Huber ★ 13k • written 6.9 years ago by n.lu • 0

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deseq rna-seq filtering DE deseq2

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by svlachavas ▴ 830

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grangeslist filtering r

7.6 years ago Jurat Shahidin ▴ 80

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edger filtering

updated 5.4 years ago by Ryan C. Thompson ★ 7.9k • written 5.4 years ago by rproendo ▴ 20

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affymetrix limma filtering

updated 9.0 years ago by James W. MacDonald 65k • written 9.0 years ago by ablanchetcohen • 0

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deseq2 r filtering bioconductor

updated 7.7 years ago by Steve Lianoglou ★ 13k • written 7.7 years ago by rattigak • 0

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deseq2 filtering outliers count outliers

updated 6.7 years ago by Wolfgang Huber ★ 13k • written 6.7 years ago by heikki.sarin ▴ 10

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rna-seq filtering

updated 5.9 years ago by Gordon Smyth 50k • written 5.9 years ago by Aurora ▴ 20

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diffbind dba.report filtering

6.4 years ago konstantopoulos • 0

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diffbind filtering

6.4 years ago gasta88 • 0

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DESeq2 filtering

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by A ▴ 40

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edger filtering cpm

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by lynski008 • 0

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limma filtering

updated 6.9 years ago by Steve Lianoglou ★ 13k • written 6.9 years ago by jamie.gearing ▴ 60

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704

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deseq2 filtering

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by n_h_78 • 0

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deseq2 differential gene expression filtering

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by mnaymik • 0

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filtering scran

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by amckenz • 0

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bed files bedtools filtering chipseq

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by rbronste ▴ 60

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

4.2 years ago jam526 • 0

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filtering probe MicroarrayData

20 months ago Fatemeh • 0

28 results • Page 1 of 1

Recent ...

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Awards • All

Scholar to Gordon Smyth 50k