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filtervcf
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2
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5
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2.6k
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VariantAnnotation: Error with ScanVcfParam
variantannotation
vcf
readvcf
filtervcf
scanvcfparam
6.7 years ago
Didi
▴ 10
5
votes
13
replies
3.0k
views
about filtering variants in a VCF file
filtervcf
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Bogdan
▴ 670
0
votes
1
reply
986
views
VariantAnnotation -filterVcf/FilterRules - 3 fxns as list to FilterRules throughs and erro
filtervcf
variantannotation
updated 7.4 years ago by
Martin Morgan
25k • written 7.5 years ago by
stephen sefick
▴ 60
2
votes
1
reply
1.2k
views
Error in extractROWS(x, eval(filter, x))
variantannotation
filtervcf
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
TimothéeFlutre
▴ 80
2
votes
2
replies
1.3k
views
a filter works alone but not with other filters
variantannotation
vcf
filtervcf
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
TimothéeFlutre
▴ 80
5
votes
2
replies
1.1k
views
filter "isSnp" for VCF
variantannotation
filtervcf
vcf
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
TimothéeFlutre
▴ 80
0
votes
2
replies
1.5k
views
filterVcf: error with param argument
VariantAnnotation
filterVcf
ScanVcfParam
vcf
writeVcf
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
pau.puigdevall
• 0
3
votes
5
replies
1.5k
views
filterVcf: crash with isSNV() filter argument
VariantAnnotation
filterVcf
8.7 years ago
pau.puigdevall
• 0
4
votes
4
replies
2.0k
views
readVcfAsVRanges + FilterRules
variantannotation
filterVcf
readvcfasvranges
filterRules
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
Sigve Nakken
▴ 50
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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