Bioconductor FindOverlapsOfPeaks

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test fisher exact r findoverlapsofpeaks

updated 7 months ago by cherokee1456 • 0 • written 7.9 years ago by Jurat Shahidin ▴ 80

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chippeakanno findOverlapsOfPeaks

updated 8.5 years ago by Hari Easwaran ▴ 240 • written 8.6 years ago by da.de ▴ 30

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findOverlapsOfPeaks ChIPpeakAnno chipseq

24 months ago Nadav • 0

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

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Answer: Differential gene expression analysis

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