Bioconductor Fishpond

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swish salmon fishpond

updated 12 weeks ago by Michael Love 41k • written 12 weeks ago by Nicholas • 0

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1.0k

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fishpond swish

10 months ago Miguel ▴ 20

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660

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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776

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fishpond tximeta DESeq2

updated 6 months ago by Michael Love 41k • written 14 months ago by Rihards Saksis • 0

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999

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fishpond DESeq2

updated 12 months ago by Michael Love 41k • written 20 months ago by alexyz • 0

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Comment: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k

Or that. ;-D

Answer: Error retrieving ensembl gene id using biomaRt... by Mike Smith ★ 6.5k

I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`

Answer: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k

I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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